Variant report
| Variant | rs72948408 |
|---|---|
| Chromosome Location | chr1:84940609-84940610 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr1:84940360-84940858 | IMR90 | lung: | n/a | chr1:84940740-84940753 |
| 2 | CEBPB | chr1:84940413-84940796 | HepG2 | liver: | n/a | chr1:84940740-84940753 |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPF1 | TF binding region |
| ENSG00000117133 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1395418 | 0.96[EUR][1000 genomes] |
| rs17365681 | 0.96[EUR][1000 genomes] |
| rs17365723 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17374048 | 0.98[EUR][1000 genomes] |
| rs17374753 | 1.00[EUR][1000 genomes] |
| rs17540101 | 1.00[EUR][1000 genomes] |
| rs312403 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs41284589 | 0.92[EUR][1000 genomes] |
| rs41284591 | 0.96[EUR][1000 genomes] |
| rs41284599 | 0.92[EUR][1000 genomes] |
| rs41293029 | 0.96[EUR][1000 genomes] |
| rs41302796 | 0.96[EUR][1000 genomes] |
| rs4512665 | 0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4907081 | 1.00[EUR][1000 genomes] |
| rs72946368 | 0.98[EUR][1000 genomes] |
| rs72946369 | 1.00[EUR][1000 genomes] |
| rs72946390 | 1.00[EUR][1000 genomes] |
| rs72948421 | 1.00[EUR][1000 genomes] |
| rs72948483 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830437 | chr1:84837524-85001269 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
