Variant report
| Variant | rs72946390 |
|---|---|
| Chromosome Location | chr1:84935031-84935032 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:84932734..84935177-chr1:84944931..84946479,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117133 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1395418 | 0.92[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17365681 | 0.96[EUR][1000 genomes] |
| rs17365723 | 0.96[EUR][1000 genomes] |
| rs17374048 | 0.98[EUR][1000 genomes] |
| rs17374753 | 1.00[EUR][1000 genomes] |
| rs17540101 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs312403 | 0.96[EUR][1000 genomes] |
| rs41284589 | 0.92[EUR][1000 genomes] |
| rs41284591 | 0.96[EUR][1000 genomes] |
| rs41284599 | 0.92[EUR][1000 genomes] |
| rs41293029 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs41302796 | 0.96[EUR][1000 genomes] |
| rs4512665 | 0.96[EUR][1000 genomes] |
| rs4907081 | 1.00[EUR][1000 genomes] |
| rs72946368 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72946369 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72948408 | 1.00[EUR][1000 genomes] |
| rs72948421 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72948483 | 0.81[AFR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830437 | chr1:84837524-85001269 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
