Variant report

Variant	rs72946409
Chromosome Location	chr2:98371080-98371081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98370843..98373809-chr2:98614245..98616130,2	K562	blood:
2	chr2:98371016..98372901-chr2:98373770..98376457,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11892146	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11898394	1.00[AMR][1000 genomes]
rs11900781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11900903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11903844	0.89[AFR][1000 genomes]
rs1503201	1.00[AMR][1000 genomes]
rs1503203	1.00[AMR][1000 genomes]
rs17022209	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022289	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022726	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022736	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17025339	1.00[AMR][1000 genomes]
rs2309318	0.98[AFR][1000 genomes]
rs35774346	0.93[AFR][1000 genomes]
rs56065241	1.00[AMR][1000 genomes]
rs57434542	1.00[AMR][1000 genomes]
rs58187838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60828800	1.00[AMR][1000 genomes]
rs60885334	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61712471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6543226	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6726775	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6734701	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6736475	1.00[AMR][1000 genomes]
rs6737992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6742955	0.89[AFR][1000 genomes]
rs6746457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942856	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942862	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942882	0.93[AFR][1000 genomes]
rs72942885	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942894	0.82[AFR][1000 genomes]
rs72942896	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72942898	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944808	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944812	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944818	0.85[AFR][1000 genomes]
rs72944825	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944834	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944842	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946410	0.98[AFR][1000 genomes]
rs72946417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946425	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72946453	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7579764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98348200-98372400	Weak transcription	Esophagus	oesophagus
2	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:98355000-98373200	Weak transcription	Gastric	stomach
4	chr2:98357400-98371400	Weak transcription	Dnd41	blood
5	chr2:98357400-98372000	Weak transcription	Pancreas	Pancrea
6	chr2:98358600-98372000	Weak transcription	Brain Germinal Matrix	brain
7	chr2:98358800-98371600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:98359200-98371200	Weak transcription	Small Intestine	intestine
9	chr2:98359200-98371800	Weak transcription	Right Ventricle	heart
10	chr2:98359200-98382400	Weak transcription	Psoas Muscle	Psoas
11	chr2:98360200-98371200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:98361000-98373200	Weak transcription	Ovary	ovary
13	chr2:98361200-98371200	Weak transcription	Brain Anterior Caudate	brain
14	chr2:98361200-98371200	Weak transcription	HepG2	liver
15	chr2:98361200-98371400	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:98361200-98371800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:98361200-98372000	Weak transcription	Aorta	Aorta
18	chr2:98362000-98371400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:98362600-98371200	Weak transcription	Adipose Nuclei	Adipose
20	chr2:98362800-98372200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr2:98363200-98375600	Weak transcription	Hela-S3	cervix
22	chr2:98363600-98371800	Weak transcription	A549	lung
23	chr2:98363800-98373200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:98364200-98373400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:98364600-98374800	Weak transcription	Stomach Mucosa	stomach
26	chr2:98364600-98375000	Weak transcription	Fetal Brain Male	brain
27	chr2:98364800-98372200	Weak transcription	Colon Smooth Muscle	Colon
28	chr2:98365000-98373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:98365200-98371200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:98365400-98371200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:98365400-98371200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:98365400-98371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr2:98365400-98371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:98365400-98371200	Weak transcription	Spleen	Spleen
35	chr2:98365400-98371400	Weak transcription	Fetal Brain Female	brain
36	chr2:98365400-98371800	Weak transcription	Thymus	Thymus
37	chr2:98365400-98371800	Weak transcription	GM12878-XiMat	blood
38	chr2:98365400-98372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr2:98365400-98372400	Weak transcription	K562	blood
40	chr2:98365400-98373400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr2:98365400-98375000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr2:98365400-98375400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:98365400-98375800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr2:98366000-98371200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:98366000-98374200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr2:98366200-98372000	Weak transcription	Fetal Kidney	kidney
47	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr2:98366400-98376800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr2:98366400-98384600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr2:98366800-98377600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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