Variant report

Variant	rs72946410
Chromosome Location	chr2:98372563-98372564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:98367186..98369342-chr2:98372074..98374129,2	MCF-7	breast:
2	chr2:98371656..98373515-chr2:98376477..98379656,3	MCF-7	breast:
3	chr2:98370843..98373809-chr2:98614245..98616130,2	K562	blood:
4	chr2:98367567..98369745-chr2:98371169..98373784,2	K562	blood:
5	chr2:98372004..98373640-chr2:98374826..98376780,2	MCF-7	breast:
6	chr2:98371016..98372901-chr2:98373770..98376457,3	K562	blood:

Variant related genes	Relation type
ENSG00000075568	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11892146	0.81[AFR][1000 genomes]
rs11895466	0.85[AFR][1000 genomes]
rs11900781	0.81[AFR][1000 genomes]
rs11900903	0.89[AFR][1000 genomes]
rs11903844	0.91[AFR][1000 genomes]
rs17022209	0.90[AFR][1000 genomes]
rs17022289	0.94[AFR][1000 genomes]
rs17022557	0.90[AFR][1000 genomes]
rs17022726	0.82[AFR][1000 genomes]
rs17022736	0.86[AFR][1000 genomes]
rs2309318	1.00[AFR][1000 genomes]
rs35774346	0.96[AFR][1000 genomes]
rs58187838	0.89[AFR][1000 genomes]
rs60885334	0.86[AFR][1000 genomes]
rs61712471	0.89[AFR][1000 genomes]
rs6543226	0.81[AFR][1000 genomes]
rs6726775	0.81[AFR][1000 genomes]
rs6734701	0.86[AFR][1000 genomes]
rs6737992	0.94[AFR][1000 genomes]
rs6742955	0.91[AFR][1000 genomes]
rs6746457	0.85[AFR][1000 genomes]
rs72942824	0.89[AFR][1000 genomes]
rs72942830	0.86[AFR][1000 genomes]
rs72942834	0.87[AFR][1000 genomes]
rs72942836	0.86[AFR][1000 genomes]
rs72942856	0.86[AFR][1000 genomes]
rs72942862	0.86[AFR][1000 genomes]
rs72942871	0.86[AFR][1000 genomes]
rs72942872	0.86[AFR][1000 genomes]
rs72942876	0.86[AFR][1000 genomes]
rs72942882	0.96[AFR][1000 genomes]
rs72942885	0.85[AFR][1000 genomes]
rs72942896	0.85[AFR][1000 genomes]
rs72942898	0.85[AFR][1000 genomes]
rs72944808	0.89[AFR][1000 genomes]
rs72944812	0.89[AFR][1000 genomes]
rs72944813	0.89[AFR][1000 genomes]
rs72944818	0.87[AFR][1000 genomes]
rs72944825	0.81[AFR][1000 genomes]
rs72944834	0.81[AFR][1000 genomes]
rs72944842	0.81[AFR][1000 genomes]
rs72946409	0.98[AFR][1000 genomes]
rs72946417	0.90[AFR][1000 genomes]
rs72946421	0.90[AFR][1000 genomes]
rs72946425	0.90[AFR][1000 genomes]
rs72946431	0.94[AFR][1000 genomes]
rs72946447	0.86[AFR][1000 genomes]
rs72946448	0.86[AFR][1000 genomes]
rs72946453	0.89[AFR][1000 genomes]
rs7579764	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531382	chr2:98250628-98457616	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98352200-98398800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:98355000-98373200	Weak transcription	Gastric	stomach
3	chr2:98359200-98382400	Weak transcription	Psoas Muscle	Psoas
4	chr2:98361000-98373200	Weak transcription	Ovary	ovary
5	chr2:98363200-98375600	Weak transcription	Hela-S3	cervix
6	chr2:98363800-98373200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:98364200-98373400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr2:98364600-98374800	Weak transcription	Stomach Mucosa	stomach
9	chr2:98364600-98375000	Weak transcription	Fetal Brain Male	brain
10	chr2:98365000-98373200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:98365400-98373400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:98365400-98375000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr2:98365400-98375400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:98365400-98375800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:98366000-98374200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:98366200-98400000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr2:98366400-98376800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr2:98366400-98384600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr2:98366800-98377600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:98367200-98385000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr2:98367400-98380000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr2:98368000-98393800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:98368400-98377000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:98368400-98383600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:98368600-98373600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:98368600-98413000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr2:98368800-98373200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:98369200-98373400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:98369200-98381200	Weak transcription	Fetal Heart	heart
30	chr2:98369400-98376600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr2:98369600-98398800	Strong transcription	Fetal Muscle Leg	muscle
32	chr2:98369800-98373200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:98369800-98373600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr2:98369800-98374800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr2:98369800-98384800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:98370200-98376800	Weak transcription	NHDF-Ad	bronchial
37	chr2:98370200-98392600	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr2:98370400-98376600	Strong transcription	Primary T cells from cord blood	blood
39	chr2:98370400-98382800	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr2:98370400-98383600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr2:98370400-98386400	Strong transcription	Fetal Intestine Small	intestine
42	chr2:98370600-98381800	Strong transcription	Lung	lung
43	chr2:98370600-98384400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr2:98370600-98384400	Strong transcription	Placenta	Placenta
45	chr2:98370600-98392400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:98370600-98393800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr2:98370600-98407600	Weak transcription	HUVEC	blood vessel
48	chr2:98370800-98375400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr2:98370800-98384200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:98370800-98384400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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