Variant report
| Variant | rs72952324 |
|---|---|
| Chromosome Location | chr4:106212230-106212231 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs57520418 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57729291 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58428131 | 0.95[AFR][1000 genomes] |
| rs59479204 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60382101 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60786079 | 0.85[AFR][1000 genomes] |
| rs60834172 | 1.00[EUR][1000 genomes] |
| rs6811468 | 1.00[EUR][1000 genomes] |
| rs72950501 | 0.85[AFR][1000 genomes] |
| rs72952305 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952317 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952331 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72952343 | 1.00[EUR][1000 genomes] |
| rs72955116 | 1.00[EUR][1000 genomes] |
| rs72955127 | 1.00[EUR][1000 genomes] |
| rs72955137 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72955180 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72955193 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72961197 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72961199 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963007 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963014 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963031 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963032 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963036 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963038 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72963046 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461609 | chr4:105869548-106366209 | Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv470063 | chr4:105869548-106366209 | Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv595007 | chr4:105869548-106366209 | Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 4 | nsv879698 | chr4:106155751-106309224 | Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:106211200-106213000 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr4:106211200-106214800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr4:106211200-106215600 | Weak transcription | Aorta | Aorta |
