Variant report

Variant	rs72955116
Chromosome Location	chr4:106052795-106052796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:105884034..105895590-chr4:106044778..106053207,47	MCF-7	breast:
2	chr4:106050395..106053162-chr4:106393582..106396222,5	MCF-7	breast:
3	chr4:105886561..105894585-chr4:106043962..106052941,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248373	Chromatin interaction
ENSG00000138777	Chromatin interaction
ENSG00000248242	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57520418	1.00[EUR][1000 genomes]
rs57729291	1.00[EUR][1000 genomes]
rs59479204	1.00[EUR][1000 genomes]
rs60382101	1.00[EUR][1000 genomes]
rs6811468	1.00[EUR][1000 genomes]
rs72952305	1.00[EUR][1000 genomes]
rs72952317	1.00[EUR][1000 genomes]
rs72952324	1.00[EUR][1000 genomes]
rs72952331	1.00[EUR][1000 genomes]
rs72952343	1.00[EUR][1000 genomes]
rs72955127	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72955137	1.00[EUR][1000 genomes]
rs72955158	0.83[AFR][1000 genomes]
rs72955180	1.00[EUR][1000 genomes]
rs72955193	1.00[EUR][1000 genomes]
rs72961197	1.00[EUR][1000 genomes]
rs72961199	1.00[EUR][1000 genomes]
rs72963007	1.00[EUR][1000 genomes]
rs72963014	1.00[EUR][1000 genomes]
rs72963031	1.00[EUR][1000 genomes]
rs72963032	1.00[EUR][1000 genomes]
rs72963036	1.00[EUR][1000 genomes]
rs72963038	1.00[EUR][1000 genomes]
rs72963046	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106049400-106053200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:106049600-106053200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:106051400-106056600	Weak transcription	Fetal Heart	heart
4	chr4:106052000-106053200	Enhancers	Primary B cells from cord blood	blood
5	chr4:106052400-106052800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:106052400-106056800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:106052600-106056400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:106052600-106056600	Weak transcription	Primary hematopoietic stem cells	blood

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