Variant report

Variant	rs72952331
Chromosome Location	chr4:106214826-106214827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TET2-6	chr4:106214815-106215100	NONHSAT097669

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs57520418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57729291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58428131	0.95[AFR][1000 genomes]
rs59479204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60382101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60786079	0.85[AFR][1000 genomes]
rs60834172	1.00[EUR][1000 genomes]
rs6811468	1.00[EUR][1000 genomes]
rs72950501	0.85[AFR][1000 genomes]
rs72952305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72952343	1.00[EUR][1000 genomes]
rs72955116	1.00[EUR][1000 genomes]
rs72955127	1.00[EUR][1000 genomes]
rs72955137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72961199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72963046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879698	chr4:106155751-106309224	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106211200-106215600	Weak transcription	Aorta	Aorta
2	chr4:106214200-106215800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr4:106214600-106215800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:106214800-106215000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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