Variant report

Variant	rs7296053
Chromosome Location	chr12:29518013-29518014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29516247..29519208-chr12:29526814..29530124,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57871563	1.00[AMR][1000 genomes]
rs61476653	1.00[AMR][1000 genomes]
rs7311446	1.00[AMR][1000 genomes]
rs73271565	1.00[AMR][1000 genomes]
rs73273343	1.00[AMR][1000 genomes]
rs73273346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273351	1.00[AMR][1000 genomes]
rs73273355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273359	1.00[AMR][1000 genomes]
rs73273363	1.00[AMR][1000 genomes]
rs73273364	1.00[AMR][1000 genomes]
rs73273368	1.00[AMR][1000 genomes]
rs73273385	1.00[AMR][1000 genomes]
rs73274821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274900	1.00[AMR][1000 genomes]
rs73276814	1.00[AMR][1000 genomes]
rs73278713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv1796867	chr12:29501941-29524159	Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29427200-29527400	Weak transcription	Small Intestine	intestine
2	chr12:29462600-29533000	Weak transcription	Aorta	Aorta
3	chr12:29470800-29532800	Weak transcription	Right Ventricle	heart
4	chr12:29473800-29522600	Weak transcription	NHEK	skin
5	chr12:29476200-29533400	Weak transcription	Pancreas	Pancrea
6	chr12:29476400-29532600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:29476400-29533200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:29484200-29532000	Weak transcription	Fetal Brain Male	brain
9	chr12:29485600-29533400	Weak transcription	Gastric	stomach
10	chr12:29486800-29528600	Weak transcription	Psoas Muscle	Psoas
11	chr12:29487000-29533000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr12:29488800-29532000	Weak transcription	NHLF	lung
13	chr12:29489600-29525600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:29490000-29533400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:29490000-29533400	Weak transcription	Esophagus	oesophagus
16	chr12:29490400-29524600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:29492800-29519000	Weak transcription	HepG2	liver
18	chr12:29493600-29532600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr12:29494400-29532400	Weak transcription	Brain Substantia Nigra	brain
20	chr12:29494600-29532800	Weak transcription	Colonic Mucosa	Colon
21	chr12:29496400-29532200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr12:29496800-29519000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr12:29497400-29532400	Weak transcription	Fetal Heart	heart
24	chr12:29497600-29518200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:29499000-29532400	Weak transcription	Fetal Brain Female	brain
26	chr12:29499200-29518200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:29499200-29526600	Weak transcription	Stomach Mucosa	stomach
28	chr12:29500200-29533400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr12:29502200-29518200	Weak transcription	Hela-S3	cervix
30	chr12:29503200-29518200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:29503400-29532200	Weak transcription	HSMMtube	muscle
32	chr12:29504200-29523000	Weak transcription	Colon Smooth Muscle	Colon
33	chr12:29504200-29525800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr12:29505000-29532400	Weak transcription	Brain Angular Gyrus	brain
35	chr12:29505200-29524600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:29507600-29532200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:29508800-29518200	Weak transcription	NHDF-Ad	bronchial
38	chr12:29509400-29518200	Weak transcription	Osteobl	bone
39	chr12:29509400-29521600	Weak transcription	Left Ventricle	heart
40	chr12:29509400-29529800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:29510200-29532600	Weak transcription	Fetal Stomach	stomach
42	chr12:29510400-29518200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr12:29510400-29533400	Weak transcription	Lung	lung
44	chr12:29510600-29518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr12:29510600-29518200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr12:29510800-29520800	Weak transcription	Brain Germinal Matrix	brain
47	chr12:29511600-29532200	Weak transcription	HMEC	breast
48	chr12:29513000-29525800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr12:29513600-29525000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr12:29513800-29524600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links