Variant report
| Variant | rs73276814 |
|---|---|
| Chromosome Location | chr12:29565590-29565591 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ERGIC2-1 | chr12:29565419-29565658 | XLOC_010039 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs57871563 | 1.00[AMR][1000 genomes] |
| rs61476653 | 1.00[AMR][1000 genomes] |
| rs7296053 | 1.00[AMR][1000 genomes] |
| rs7311446 | 1.00[AMR][1000 genomes] |
| rs73271565 | 1.00[AMR][1000 genomes] |
| rs73273343 | 1.00[AMR][1000 genomes] |
| rs73273346 | 1.00[AMR][1000 genomes] |
| rs73273351 | 1.00[AMR][1000 genomes] |
| rs73273355 | 1.00[AMR][1000 genomes] |
| rs73273359 | 1.00[AMR][1000 genomes] |
| rs73273363 | 1.00[AMR][1000 genomes] |
| rs73273364 | 1.00[AMR][1000 genomes] |
| rs73273368 | 1.00[AMR][1000 genomes] |
| rs73273385 | 1.00[AMR][1000 genomes] |
| rs73274821 | 1.00[AMR][1000 genomes] |
| rs73274900 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278713 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv995123 | chr12:29095272-29571558 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053641 | chr12:29268813-29854413 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 3 | esv12612 | chr12:29558508-29566219 | Inactive region | lncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv820607 | chr12:29558508-29566219 | Inactive region | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv898952 | chr12:29565537-29617550 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
