Variant report

Variant	rs73273359
Chromosome Location	chr12:29493872-29493873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29491567..29494564-chr12:29531936..29534228,2	K562	blood:

Variant related genes	Relation type
ENSG00000087502	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57871563	1.00[AMR][1000 genomes]
rs61476653	1.00[AMR][1000 genomes]
rs7296053	1.00[AMR][1000 genomes]
rs7311446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271565	1.00[AMR][1000 genomes]
rs73273343	1.00[AMR][1000 genomes]
rs73273346	1.00[AMR][1000 genomes]
rs73273351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273355	1.00[AMR][1000 genomes]
rs73273363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274821	1.00[AMR][1000 genomes]
rs73274900	1.00[AMR][1000 genomes]
rs73276814	1.00[AMR][1000 genomes]
rs73278713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29427200-29527400	Weak transcription	Small Intestine	intestine
2	chr12:29452800-29494200	Weak transcription	Lung	lung
3	chr12:29462600-29533000	Weak transcription	Aorta	Aorta
4	chr12:29465000-29494200	Weak transcription	Colonic Mucosa	Colon
5	chr12:29470000-29495600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr12:29470000-29500000	Weak transcription	K562	blood
7	chr12:29470800-29496000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:29470800-29508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:29470800-29532800	Weak transcription	Right Ventricle	heart
10	chr12:29471200-29494400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr12:29471400-29495800	Weak transcription	Brain Anterior Caudate	brain
12	chr12:29473800-29522600	Weak transcription	NHEK	skin
13	chr12:29474200-29494200	Weak transcription	NHDF-Ad	bronchial
14	chr12:29476000-29496000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr12:29476000-29502600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr12:29476200-29509400	Weak transcription	Spleen	Spleen
17	chr12:29476200-29512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:29476200-29533400	Weak transcription	Pancreas	Pancrea
19	chr12:29476400-29494200	Weak transcription	Fetal Stomach	stomach
20	chr12:29476400-29498600	Weak transcription	Ovary	ovary
21	chr12:29476400-29509600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr12:29476400-29532600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr12:29476400-29533200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:29476600-29494200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:29476600-29499200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:29477000-29517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:29477200-29494200	Weak transcription	Fetal Intestine Small	intestine
28	chr12:29482000-29497200	Weak transcription	Brain Angular Gyrus	brain
29	chr12:29482200-29501400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr12:29483400-29518000	Weak transcription	Brain Hippocampus Middle	brain
31	chr12:29483800-29496000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr12:29484200-29532000	Weak transcription	Fetal Brain Male	brain
33	chr12:29485000-29495800	Weak transcription	Fetal Kidney	kidney
34	chr12:29485400-29494200	Weak transcription	Fetal Brain Female	brain
35	chr12:29485600-29533400	Weak transcription	Gastric	stomach
36	chr12:29486400-29495800	Weak transcription	Fetal Heart	heart
37	chr12:29486800-29528600	Weak transcription	Psoas Muscle	Psoas
38	chr12:29487000-29533000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr12:29487800-29501400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr12:29488000-29495800	Weak transcription	GM12878-XiMat	blood
41	chr12:29488400-29496000	Weak transcription	Thymus	Thymus
42	chr12:29488600-29503800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:29488800-29532000	Weak transcription	NHLF	lung
44	chr12:29489200-29498800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr12:29489600-29497200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr12:29489600-29500000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:29489600-29525600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr12:29489800-29510000	Weak transcription	Brain Germinal Matrix	brain
49	chr12:29490000-29494000	Weak transcription	Fetal Muscle Leg	muscle
50	chr12:29490000-29495800	Weak transcription	Brain Inferior Temporal Lobe	brain

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