Variant report

Variant	rs72967103
Chromosome Location	chr3:119535408-119535409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:119529297..119532483-chr3:119535259..119538181,3	MCF-7	breast:
2	chr3:119531331..119533784-chr3:119534969..119537956,2	K562	blood:
3	chr3:119531732..119533815-chr3:119534255..119536418,2	MCF-7	breast:
4	chr3:119534052..119535744-chr3:119538553..119540497,2	MCF-7	breast:
5	chr3:119532575..119536291-chr3:119538231..119540719,3	K562	blood:
6	chr3:119533302..119535583-chr3:119535890..119538879,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144852	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs57461967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57512425	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58340674	1.00[AMR][1000 genomes]
rs58533045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58742584	1.00[AMR][1000 genomes]
rs72967126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967130	0.96[AFR][1000 genomes]
rs72967133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967191	1.00[AMR][1000 genomes]
rs72967195	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969111	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969116	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969128	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969131	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969135	1.00[AMR][1000 genomes]
rs72969142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119529400-119535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:119529400-119537000	Strong transcription	Fetal Intestine Large	intestine
3	chr3:119529400-119537800	Strong transcription	Fetal Intestine Small	intestine
4	chr3:119529400-119544000	Weak transcription	Right Atrium	heart
5	chr3:119529400-119566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:119529600-119536000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:119529600-119543400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:119529600-119582000	Weak transcription	Spleen	Spleen
9	chr3:119529800-119543600	Weak transcription	GM12878-XiMat	blood
10	chr3:119530200-119542800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:119531600-119536200	Weak transcription	Fetal Heart	heart
12	chr3:119532000-119543800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:119532400-119535800	Weak transcription	Left Ventricle	heart
14	chr3:119532400-119551000	Weak transcription	Right Ventricle	heart
15	chr3:119533600-119537200	Strong transcription	Duodenum Mucosa	Duodenum
16	chr3:119534000-119544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:119534400-119537400	Strong transcription	Liver	Liver
18	chr3:119534600-119536800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr3:119534800-119558600	Weak transcription	Colonic Mucosa	Colon
20	chr3:119535000-119544200	Weak transcription	HepG2	liver
21	chr3:119535400-119536000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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