Variant report

Variant	rs72977081
Chromosome Location	chr11:105974345-105974346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17105049	0.80[EUR][1000 genomes]
rs6591150	0.85[EUR][1000 genomes]
rs72977065	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72979061	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72979073	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
2	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
3	chr11:105968400-105975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:105968600-105975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:105968600-105975200	Weak transcription	Psoas Muscle	Psoas
6	chr11:105968800-105978000	Weak transcription	Ovary	ovary
7	chr11:105970000-105975000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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