Variant report

Variant	rs17105049
Chromosome Location	chr11:106003379-106003380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10791780	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[YRI][hapmap]
rs10895900	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs10895901	0.82[YRI][hapmap]
rs10895904	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs11226915	0.85[CHB][hapmap]
rs11226920	0.81[CHD][hapmap];0.85[JPT][hapmap];0.93[LWK][hapmap];0.84[YRI][hapmap]
rs11226922	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs11226931	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12365489	0.85[CHB][hapmap]
rs1893174	0.85[CHB][hapmap]
rs1939798	0.85[CHB][hapmap]
rs1939799	0.85[CHB][hapmap];0.92[CHD][hapmap]
rs1940772	0.86[ASN][1000 genomes]
rs2155340	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs2186731	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs2277278	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740869	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237618	0.81[CHB][hapmap]
rs4440991	0.85[CHB][hapmap]
rs4474407	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs4754141	0.85[CHB][hapmap]
rs60606604	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591150	0.86[CEU][hapmap]
rs7108636	0.86[JPT][hapmap];0.80[YRI][hapmap]
rs72977081	0.80[EUR][1000 genomes]
rs72979061	0.85[EUR][1000 genomes]
rs72979073	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs754562	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap]
rs7554	0.85[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.84[YRI][hapmap]
rs766717	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap]
rs9651674	0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17105049	CAPZA2	trans	cerebellum	SCAN
rs17105049	C11orf65	cis	cerebellum	SCAN
rs17105049	KDELC2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106002400-106003600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:106002600-106003400	Enhancers	Placenta	Placenta

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