Variant report

Variant	rs10791780
Chromosome Location	chr11:105971474-105971475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105947655..105949809-chr11:105969558..105972572,3	MCF-7	breast:
2	chr11:105939028..105941380-chr11:105969620..105972203,2	K562	blood:

Variant related genes	Relation type
ENSG00000182359	Chromatin interaction
ENSG00000149313	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1048683	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10895900	0.85[CHB][hapmap]
rs10895901	0.81[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10895902	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895904	0.90[CHB][hapmap]
rs11226907	1.00[CEU][hapmap]
rs11226909	1.00[CEU][hapmap]
rs11226911	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11226914	1.00[CEU][hapmap]
rs11226915	0.90[CHB][hapmap]
rs11226920	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11226922	0.80[CHB][hapmap]
rs12365489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17105049	0.82[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.88[YRI][hapmap]
rs1893174	0.90[CHB][hapmap]
rs1939798	0.90[CHB][hapmap]
rs1939799	0.90[CHB][hapmap]
rs2155340	0.85[CHB][hapmap]
rs2186731	0.85[CHB][hapmap]
rs2277278	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3740869	0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap]
rs4237618	0.86[CHB][hapmap]
rs4440991	0.90[CHB][hapmap]
rs4474407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4754141	0.90[CHB][hapmap]
rs60606604	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7108636	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs754562	0.80[CHB][hapmap]
rs7554	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs766717	0.80[CHB][hapmap]
rs9651674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
3	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
4	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
5	chr11:105958600-105971800	Weak transcription	Hela-S3	cervix
6	chr11:105961400-105971600	Strong transcription	HSMM	muscle
7	chr11:105963000-105972400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:105963200-105971800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:105963200-105972200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:105964000-105971600	Weak transcription	Right Ventricle	heart
11	chr11:105964000-105971800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:105964200-105972000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:105966800-105971600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:105966800-105971600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:105966800-105971800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:105966800-105972400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:105967400-105971800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:105968400-105971800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:105968400-105972200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:105968400-105972800	Weak transcription	Brain Angular Gyrus	brain
21	chr11:105968400-105975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:105968600-105971600	Weak transcription	Fetal Kidney	kidney
23	chr11:105968600-105971600	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:105968600-105971800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:105968600-105972000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:105968600-105972000	Weak transcription	Left Ventricle	heart
27	chr11:105968600-105972000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:105968600-105972000	Weak transcription	NHDF-Ad	bronchial
29	chr11:105968600-105972400	Weak transcription	Osteobl	bone
30	chr11:105968600-105972800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:105968600-105973600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:105968600-105975200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:105968600-105975200	Weak transcription	Psoas Muscle	Psoas
34	chr11:105968800-105971600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:105968800-105971600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:105968800-105971800	Weak transcription	Primary T cells from cord blood	blood
37	chr11:105968800-105972000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:105968800-105972000	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:105968800-105973200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:105968800-105978000	Weak transcription	Ovary	ovary
41	chr11:105969000-105971600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:105969000-105971600	Weak transcription	Brain Anterior Caudate	brain
43	chr11:105969000-105971800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:105969000-105972400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:105969000-105972800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:105969000-105973800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:105969200-105972200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:105969200-105972400	Weak transcription	NH-A	brain
49	chr11:105969200-105973000	Weak transcription	Fetal Thymus	thymus
50	chr11:105969200-105974000	Weak transcription	GM12878-XiMat	blood

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