Variant report

Variant	rs4474407
Chromosome Location	chr11:105961922-105961923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1048683	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10791780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895900	0.85[CHB][hapmap]
rs10895901	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895902	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895904	0.90[CHB][hapmap]
rs11226907	1.00[CEU][hapmap]
rs11226909	1.00[CEU][hapmap]
rs11226911	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226914	1.00[CEU][hapmap]
rs11226915	0.91[CHB][hapmap]
rs11226920	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11226922	0.80[CHB][hapmap]
rs12365489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17105049	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap]
rs1893174	0.90[CHB][hapmap]
rs1939798	0.91[CHB][hapmap]
rs1939799	0.90[CHB][hapmap]
rs2155340	0.85[CHB][hapmap]
rs2186731	0.85[CHB][hapmap]
rs2277278	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3740869	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4237618	0.86[CHB][hapmap]
rs4440991	0.91[CHB][hapmap]
rs4754141	0.91[CHB][hapmap]
rs60606604	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7108636	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs754562	0.80[CHB][hapmap]
rs7554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs766717	0.80[CHB][hapmap]
rs9651674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105949200-105962200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:105949200-105966000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:105949200-105967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:105949200-105969800	Weak transcription	Lung	lung
6	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
7	chr11:105949800-105962200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:105949800-105962200	Weak transcription	Thymus	Thymus
9	chr11:105950400-105971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:105950600-105969400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:105951200-105962200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:105952000-105969400	Weak transcription	Colonic Mucosa	Colon
13	chr11:105953400-105962000	Weak transcription	Placenta	Placenta
14	chr11:105953400-105962200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:105953400-105962400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:105953400-105962400	Weak transcription	Ovary	ovary
17	chr11:105953400-105962400	Weak transcription	Right Ventricle	heart
18	chr11:105953400-105965600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:105953400-105970600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:105953600-105969600	Weak transcription	Gastric	stomach
21	chr11:105954000-105962000	Weak transcription	HMEC	breast
22	chr11:105954000-105962400	Weak transcription	HSMMtube	muscle
23	chr11:105954000-105963000	Weak transcription	NHDF-Ad	bronchial
24	chr11:105955400-105962400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:105956000-105970000	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:105956200-105962200	Weak transcription	Fetal Stomach	stomach
27	chr11:105956800-105962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:105957200-105962000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:105957200-105971000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
31	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
32	chr11:105957600-105962200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:105957800-105962200	Weak transcription	Left Ventricle	heart
34	chr11:105957800-105968200	Weak transcription	Psoas Muscle	Psoas
35	chr11:105958000-105962200	Weak transcription	Primary B cells from cord blood	blood
36	chr11:105958000-105962400	Enhancers	Brain Anterior Caudate	brain
37	chr11:105958400-105962200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:105958600-105965200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:105958600-105970000	Weak transcription	Fetal Intestine Small	intestine
40	chr11:105958600-105971800	Weak transcription	Hela-S3	cervix
41	chr11:105958800-105962000	Weak transcription	HUVEC	blood vessel
42	chr11:105958800-105962600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr11:105959000-105969000	Weak transcription	Stomach Mucosa	stomach
44	chr11:105959200-105962200	Weak transcription	Fetal Brain Female	brain
45	chr11:105959200-105965000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:105959200-105970000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:105959200-105970400	Strong transcription	Dnd41	blood
48	chr11:105959400-105970200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:105959400-105970200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:105959600-105967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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