Variant report

Variant	rs7108636
Chromosome Location	chr11:105953971-105953972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105944340..105947220-chr11:105952969..105954869,2	K562	blood:
2	chr11:105952957..105954833-chr11:105963131..105964990,2	K562	blood:

Variant related genes	Relation type
ENSG00000149313	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1048683	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10791780	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10895901	0.81[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895902	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10895904	0.85[CHB][hapmap]
rs11226907	1.00[CEU][hapmap]
rs11226909	1.00[CEU][hapmap]
rs11226911	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226914	1.00[CEU][hapmap]
rs11226915	0.86[CHB][hapmap]
rs11226920	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12365489	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17105049	0.86[JPT][hapmap];0.80[YRI][hapmap]
rs1893174	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs1939798	0.86[CHB][hapmap]
rs1939799	0.85[CHB][hapmap]
rs2277278	0.88[AFR][1000 genomes]
rs3740869	0.87[JPT][hapmap];0.81[YRI][hapmap]
rs4237618	0.82[CHB][hapmap]
rs4440991	0.86[CHB][hapmap]
rs4474407	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs4754141	0.86[CHB][hapmap]
rs60606604	0.88[AFR][1000 genomes]
rs7554	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9651674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105949000-105973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:105949200-105956800	Weak transcription	Aorta	Aorta
3	chr11:105949200-105962200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:105949200-105966000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:105949200-105967800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:105949200-105969800	Weak transcription	Lung	lung
7	chr11:105949200-105971600	Weak transcription	Esophagus	oesophagus
8	chr11:105949800-105956800	Weak transcription	Pancreas	Pancrea
9	chr11:105949800-105962200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:105949800-105962200	Weak transcription	Thymus	Thymus
11	chr11:105950200-105954000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr11:105950200-105956400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr11:105950400-105954200	Strong transcription	NH-A	brain
14	chr11:105950400-105954600	Strong transcription	HSMM	muscle
15	chr11:105950400-105955000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:105950400-105955000	Strong transcription	NHEK	skin
17	chr11:105950400-105955200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:105950400-105955200	Weak transcription	Fetal Stomach	stomach
19	chr11:105950400-105955600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:105950400-105957200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:105950400-105958000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:105950400-105971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:105950600-105954000	Strong transcription	NHDF-Ad	bronchial
24	chr11:105950600-105954400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:105950600-105955000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:105950600-105957800	Weak transcription	Stomach Mucosa	stomach
27	chr11:105950600-105958000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:105950600-105969400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:105950800-105954000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:105950800-105954000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:105950800-105954000	Strong transcription	Fetal Muscle Leg	muscle
32	chr11:105950800-105954000	Strong transcription	HMEC	breast
33	chr11:105950800-105954400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:105950800-105954400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr11:105950800-105955000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:105950800-105956200	Strong transcription	Fetal Thymus	thymus
37	chr11:105951000-105954000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:105951000-105954000	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:105951000-105954000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:105951000-105954600	Strong transcription	HUVEC	blood vessel
41	chr11:105951000-105955000	Strong transcription	A549	lung
42	chr11:105951200-105954000	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr11:105951200-105957800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:105951200-105962200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:105951400-105954400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:105951600-105954000	Strong transcription	Primary B cells from cord blood	blood
47	chr11:105952000-105954000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:105952000-105954000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:105952000-105954000	Strong transcription	Liver	Liver
50	chr11:105952000-105954000	Strong transcription	Rectal Mucosa Donor 31	rectum

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