Variant report

Variant	rs2277278
Chromosome Location	chr11:105990464-105990465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105985462..105987830-chr11:105989704..105991423,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KBTBD3-2	chr11:105990441-105990633	ENSG00000254580

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1048683	0.80[AFR][1000 genomes]
rs10791780	0.88[ASW][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10895900	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs10895901	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs10895902	0.81[AFR][1000 genomes]
rs10895904	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs11226911	0.83[AFR][1000 genomes]
rs11226915	0.85[CHB][hapmap]
rs11226920	0.81[CHD][hapmap];0.85[JPT][hapmap];0.96[LWK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs11226922	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11226931	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12365489	0.85[CHB][hapmap]
rs17105049	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.90[MKK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893174	0.85[CHB][hapmap]
rs1939798	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs1939799	0.85[CHB][hapmap];0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs1940772	0.88[ASN][1000 genomes]
rs2155340	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs2186731	0.90[CHB][hapmap];0.92[CHD][hapmap]
rs3740869	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4237618	0.81[CHB][hapmap]
rs4440991	0.85[CHB][hapmap]
rs4474407	0.85[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap]
rs4754141	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs60606604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108636	0.86[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs72979073	0.83[EUR][1000 genomes]
rs754562	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap]
rs7554	0.85[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs766717	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap]
rs9651674	0.84[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2277278	C11orf65	cis	cerebellum	SCAN
rs2277278	KDELC2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links