Variant report
| Variant | rs72979073 |
|---|---|
| Chromosome Location | chr11:106009803-106009804 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:105948462..105950111-chr11:106008766..106010685,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000182359 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs11226931 | 0.81[EUR][1000 genomes] |
| rs11226939 | 0.80[ASN][1000 genomes] |
| rs17105049 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1939807 | 0.90[ASN][1000 genomes] |
| rs2277278 | 0.83[EUR][1000 genomes] |
| rs3740869 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs60606604 | 0.83[EUR][1000 genomes] |
| rs7126811 | 0.80[ASN][1000 genomes] |
| rs72977081 | 0.80[EUR][1000 genomes] |
| rs72979061 | 0.85[EUR][1000 genomes] |
| rs7947817 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048381 | chr11:105945117-106561574 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv898358 | chr11:105999580-106182251 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv430428 | chr11:106005901-106173046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
