Variant report

Variant	rs1939807
Chromosome Location	chr11:106016739-106016740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10736649	0.83[ASN][1000 genomes]
rs10750742	0.82[ASN][1000 genomes]
rs10750743	0.85[ASN][1000 genomes]
rs10750744	0.80[ASN][1000 genomes]
rs10750745	0.80[ASN][1000 genomes]
rs10750750	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10791784	0.83[ASN][1000 genomes]
rs10791785	0.83[ASN][1000 genomes]
rs10791802	0.91[CHB][hapmap]
rs10895908	0.88[ASN][1000 genomes]
rs10895909	0.88[ASN][1000 genomes]
rs10895910	0.88[ASN][1000 genomes]
rs10895912	0.81[ASN][1000 genomes]
rs10895913	0.83[ASN][1000 genomes]
rs10895914	0.83[ASN][1000 genomes]
rs10895915	0.83[ASN][1000 genomes]
rs10895917	0.82[ASN][1000 genomes]
rs10895918	0.82[ASN][1000 genomes]
rs10895921	0.80[ASN][1000 genomes]
rs10895922	0.80[ASN][1000 genomes]
rs11226939	0.86[ASN][1000 genomes]
rs11226942	0.83[ASN][1000 genomes]
rs12276977	0.80[ASN][1000 genomes]
rs12294538	0.80[ASN][1000 genomes]
rs1359144	0.83[ASN][1000 genomes]
rs1396156	0.91[CHB][hapmap]
rs1605567	0.91[CHB][hapmap]
rs17105049	0.86[JPT][hapmap]
rs1806481	0.90[CHB][hapmap]
rs1893171	0.83[ASN][1000 genomes]
rs1939808	0.88[ASN][1000 genomes]
rs1940756	0.85[ASN][1000 genomes]
rs1940758	0.83[ASN][1000 genomes]
rs1940759	0.83[ASN][1000 genomes]
rs1940760	0.85[ASN][1000 genomes]
rs1940761	0.82[ASN][1000 genomes]
rs1940785	0.83[ASN][1000 genomes]
rs1940786	0.83[ASN][1000 genomes]
rs1940787	0.83[ASN][1000 genomes]
rs1940790	0.82[ASN][1000 genomes]
rs2096833	0.80[ASN][1000 genomes]
rs3740869	0.87[JPT][hapmap]
rs4237619	0.82[ASN][1000 genomes]
rs4237620	0.83[ASN][1000 genomes]
rs4298866	0.83[ASN][1000 genomes]
rs4366457	0.80[ASN][1000 genomes]
rs4477412	0.80[ASN][1000 genomes]
rs4486594	0.82[ASN][1000 genomes]
rs4505036	0.80[ASN][1000 genomes]
rs4505037	0.80[ASN][1000 genomes]
rs4506615	0.83[ASN][1000 genomes]
rs4514384	0.80[ASN][1000 genomes]
rs4529863	0.80[ASN][1000 genomes]
rs4754146	0.82[ASN][1000 genomes]
rs4754147	0.82[ASN][1000 genomes]
rs4754148	0.83[ASN][1000 genomes]
rs4755127	0.83[ASN][1000 genomes]
rs4755128	0.83[ASN][1000 genomes]
rs4755146	0.91[CHB][hapmap]
rs602407	0.90[CHB][hapmap]
rs6591150	0.85[CEU][hapmap]
rs674799	0.90[CHB][hapmap]
rs7112436	0.80[ASN][1000 genomes]
rs7115529	0.80[ASN][1000 genomes]
rs7126811	0.86[ASN][1000 genomes]
rs72979073	0.90[ASN][1000 genomes]
rs7554	0.80[JPT][hapmap]
rs7934227	0.82[ASN][1000 genomes]
rs7943598	0.83[ASN][1000 genomes]
rs7947817	0.86[ASN][1000 genomes]
rs9651674	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106015800-106017400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr11:106016400-106017800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr11:106016400-106019200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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