Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:106002689-106003027	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr11:106002638-106003232	ECC-1	luminal epithelium:	n/a	n/a
3	TEAD4	chr11:106002803-106003045	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr11:106002660-106003131	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000254580	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10791780	0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap]
rs10895900	0.85[CHB][hapmap]
rs10895904	0.80[CHB][hapmap]
rs11226915	0.81[CHB][hapmap]
rs11226920	0.85[JPT][hapmap];0.88[YRI][hapmap]
rs11226922	0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11226931	0.92[ASN][1000 genomes]
rs12365489	0.80[CHB][hapmap]
rs17105049	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1893174	0.81[CHB][hapmap]
rs1939798	0.81[CHB][hapmap]
rs1939799	0.80[CHB][hapmap]
rs1940772	0.85[ASN][1000 genomes]
rs2155340	0.85[CHB][hapmap]
rs2186731	0.85[CHB][hapmap]
rs2277278	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4440991	0.81[CHB][hapmap]
rs4474407	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4754141	0.81[CHB][hapmap]
rs60606604	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7108636	0.87[JPT][hapmap];0.81[YRI][hapmap]
rs72979073	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs754562	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7554	0.80[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap]
rs766717	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs9651674	0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106001400-106003000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:106002200-106003200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:106002400-106003600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:106002600-106003400	Enhancers	Placenta	Placenta
5	chr11:106002800-106003200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:106002800-106003200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:106002800-106003200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:106002800-106003200	Enhancers	Placenta Amnion	Placenta Amnion

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