Variant report

Variant	rs1940772
Chromosome Location	chr11:105992823-105992824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10791780	0.81[CHB][hapmap]
rs10895899	0.90[ASN][1000 genomes]
rs10895900	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs10895904	0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226915	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.89[ASN][1000 genomes]
rs11226922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11226931	0.92[ASN][1000 genomes]
rs12365489	0.81[CHB][hapmap]
rs17105049	0.94[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1893174	0.88[CHB][hapmap]
rs1939798	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1939799	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2155340	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2186731	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277278	0.88[ASN][1000 genomes]
rs3740869	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs4237618	0.87[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.89[ASN][1000 genomes]
rs4440991	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.90[ASN][1000 genomes]
rs4474407	0.82[CHB][hapmap]
rs4565867	0.90[ASN][1000 genomes]
rs4754141	0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60606604	0.88[ASN][1000 genomes]
rs7108636	0.82[CHB][hapmap]
rs7130759	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7131047	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs754562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7554	0.81[CHB][hapmap]
rs766717	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9651674	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9943677	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1940772	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105992600-105993000	Active TSS	A549	lung

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