Variant report

Variant	rs11226922
Chromosome Location	chr11:105975325-105975326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105947584..105950378-chr11:105974980..105977103,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182359	Chromatin interaction
ENSG00000149313	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10791780	0.80[CHB][hapmap]
rs10895899	0.93[ASN][1000 genomes]
rs10895900	0.83[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap]
rs10895904	0.83[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226915	0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs11226931	0.90[ASN][1000 genomes]
rs12365489	0.80[CHB][hapmap]
rs17105049	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1893174	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs1939798	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1939799	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1940772	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2155340	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2186731	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.85[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2277278	0.85[ASN][1000 genomes]
rs3740869	0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4237618	0.85[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs4440991	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4474407	0.80[CHB][hapmap]
rs4565867	0.93[ASN][1000 genomes]
rs4754141	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60606604	0.85[ASN][1000 genomes]
rs7130759	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7131047	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs754562	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap]
rs7554	0.80[CHB][hapmap]
rs766717	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap]
rs9943677	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11226922	AASDHPPT	cis	lymphoblastoid	seeQTL
rs11226922	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL
rs11226922	KDELC2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105957200-105976600	Weak transcription	Pancreas	Pancrea
2	chr11:105957200-105976800	Weak transcription	Aorta	Aorta
3	chr11:105968400-105975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:105968800-105978000	Weak transcription	Ovary	ovary
5	chr11:105975200-105976600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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