Variant report

Variant	rs1939808
Chromosome Location	chr11:106017549-106017550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10736649	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10750742	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10750743	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10750744	0.92[ASN][1000 genomes]
rs10750745	0.92[ASN][1000 genomes]
rs10750746	0.82[ASN][1000 genomes]
rs10750747	0.89[ASN][1000 genomes]
rs10750748	0.88[ASN][1000 genomes]
rs10750749	0.88[ASN][1000 genomes]
rs10750750	0.95[CHB][hapmap]
rs10791783	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10791784	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10791785	0.95[ASN][1000 genomes]
rs10791787	0.89[ASN][1000 genomes]
rs10791788	0.89[ASN][1000 genomes]
rs10791789	0.88[ASN][1000 genomes]
rs10791790	0.87[ASN][1000 genomes]
rs10791791	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10791792	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10791793	0.87[ASN][1000 genomes]
rs10791794	0.85[ASN][1000 genomes]
rs10791795	0.84[ASN][1000 genomes]
rs10791796	0.84[ASN][1000 genomes]
rs10791797	0.84[ASN][1000 genomes]
rs10791798	0.81[ASN][1000 genomes]
rs10791799	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10791800	0.81[ASN][1000 genomes]
rs10791802	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10895904	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs10895908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895909	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895912	0.93[ASN][1000 genomes]
rs10895913	0.95[ASN][1000 genomes]
rs10895914	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10895915	0.95[ASN][1000 genomes]
rs10895917	0.94[ASN][1000 genomes]
rs10895918	0.94[ASN][1000 genomes]
rs10895921	0.92[ASN][1000 genomes]
rs10895922	0.92[ASN][1000 genomes]
rs10895923	0.89[ASN][1000 genomes]
rs10895924	0.88[ASN][1000 genomes]
rs10895925	0.88[ASN][1000 genomes]
rs10895926	0.88[ASN][1000 genomes]
rs10895928	0.88[ASN][1000 genomes]
rs10895929	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10895930	0.88[ASN][1000 genomes]
rs10895931	0.87[ASN][1000 genomes]
rs10895932	0.84[ASN][1000 genomes]
rs10895938	0.81[AFR][1000 genomes]
rs11226922	0.86[JPT][hapmap]
rs11226939	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226942	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11226946	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11226947	0.89[ASN][1000 genomes]
rs11226982	0.82[AFR][1000 genomes]
rs12225407	0.85[AFR][1000 genomes]
rs1354986	0.87[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1359144	0.95[ASN][1000 genomes]
rs1396156	0.82[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[AFR][1000 genomes]
rs1605566	0.81[AFR][1000 genomes]
rs1605567	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs1806481	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs1893171	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1893854	0.83[ASN][1000 genomes]
rs1893855	0.84[ASN][1000 genomes]
rs1893857	0.84[ASN][1000 genomes]
rs1939798	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs1939799	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs1939807	0.88[ASN][1000 genomes]
rs1940756	0.97[ASN][1000 genomes]
rs1940758	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1940759	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1940760	0.92[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1940765	0.87[ASN][1000 genomes]
rs1940766	0.85[ASN][1000 genomes]
rs1940767	0.88[ASN][1000 genomes]
rs1940777	0.84[ASN][1000 genomes]
rs1940778	0.84[ASN][1000 genomes]
rs1940779	0.84[ASN][1000 genomes]
rs1940780	0.84[ASN][1000 genomes]
rs1940782	0.83[ASN][1000 genomes]
rs1940783	0.83[ASN][1000 genomes]
rs1940785	0.95[ASN][1000 genomes]
rs1940786	0.95[ASN][1000 genomes]
rs1940787	0.95[ASN][1000 genomes]
rs1940790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1944772	0.84[ASN][1000 genomes]
rs1944774	0.81[ASN][1000 genomes]
rs1944775	0.81[ASN][1000 genomes]
rs2096833	0.92[ASN][1000 genomes]
rs2155340	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs2155649	0.88[ASN][1000 genomes]
rs2155650	0.87[ASN][1000 genomes]
rs2155652	0.84[ASN][1000 genomes]
rs2155653	0.84[ASN][1000 genomes]
rs2186731	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs2186880	0.88[ASN][1000 genomes]
rs4237619	0.94[ASN][1000 genomes]
rs4237620	0.95[ASN][1000 genomes]
rs4237621	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4298866	0.95[ASN][1000 genomes]
rs4310571	0.89[ASN][1000 genomes]
rs4365018	0.87[ASN][1000 genomes]
rs4366457	0.92[ASN][1000 genomes]
rs4373882	0.88[ASN][1000 genomes]
rs4431993	0.87[ASN][1000 genomes]
rs4440991	0.82[JPT][hapmap]
rs4475893	0.81[ASN][1000 genomes]
rs4477412	0.92[ASN][1000 genomes]
rs4486594	0.94[ASN][1000 genomes]
rs4488166	0.89[ASN][1000 genomes]
rs4505036	0.92[ASN][1000 genomes]
rs4505037	0.92[ASN][1000 genomes]
rs4506615	0.95[ASN][1000 genomes]
rs4508178	0.87[ASN][1000 genomes]
rs4512783	0.88[ASN][1000 genomes]
rs4512788	0.87[ASN][1000 genomes]
rs4514384	0.92[ASN][1000 genomes]
rs4529863	0.92[ASN][1000 genomes]
rs4558141	0.84[ASN][1000 genomes]
rs4559652	0.88[ASN][1000 genomes]
rs4754141	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs4754146	0.94[ASN][1000 genomes]
rs4754147	0.94[ASN][1000 genomes]
rs4754148	0.95[ASN][1000 genomes]
rs4754151	0.87[ASN][1000 genomes]
rs4755127	0.95[ASN][1000 genomes]
rs4755128	0.95[ASN][1000 genomes]
rs4755129	0.88[ASN][1000 genomes]
rs4755130	0.86[ASN][1000 genomes]
rs4755134	0.88[ASN][1000 genomes]
rs4755137	0.87[ASN][1000 genomes]
rs4755138	0.87[ASN][1000 genomes]
rs4755140	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4755146	0.95[CHB][hapmap]
rs5019762	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs602407	0.86[CHB][hapmap]
rs674799	0.86[CHB][hapmap]
rs7110907	0.84[ASN][1000 genomes]
rs7112436	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7115529	0.92[ASN][1000 genomes]
rs7126811	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs754562	0.84[CEU][hapmap];0.85[JPT][hapmap]
rs766717	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs7934227	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7943598	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7947817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048381	chr11:105945117-106561574	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898358	chr11:105999580-106182251	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430428	chr11:106005901-106173046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1939808	AASDHPPT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106016400-106017800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr11:106016400-106019200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:106017400-106017600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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