Variant report

Variant	rs72982878
Chromosome Location	chr3:103750441-103750442
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56050679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982861	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982863	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72982866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877254	chr3:103433922-103750905	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877266	chr3:103618323-103750905	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877269	chr3:103655069-103750905	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv877270	chr3:103684644-103750905	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv877271	chr3:103684644-103795249	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv10297	chr3:103721772-104050133	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103749600-103751200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:103749800-103751400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:103750400-103750800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:103750400-103750800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr3:103750400-103751000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:103750400-103751600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links