Variant report

Variant	rs72982891
Chromosome Location	chr3:103751968-103751969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56050679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982861	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982863	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72982866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877271	chr3:103684644-103795249	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv10297	chr3:103721772-104050133	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103750600-103752400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:103751800-103752200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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