Variant report

Variant	rs72982887
Chromosome Location	chr3:103751596-103751597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56050679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982861	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982863	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72982866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72982891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73849429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948426	chr3:103046716-103952548	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv949251	chr3:103046716-103977037	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv527886	chr3:103048891-103989893	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877271	chr3:103684644-103795249	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv10297	chr3:103721772-104050133	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:103750400-103751600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:103750600-103752400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:103750800-103751600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:103750800-103751800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:103751200-103751600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:103751400-103751800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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