Variant report

Variant	rs72992193
Chromosome Location	chr3:143132772-143132773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513199	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925776	1.00[AMR][1000 genomes]
rs16853508	1.00[AMR][1000 genomes]
rs16853511	1.00[AMR][1000 genomes]
rs16853527	1.00[AMR][1000 genomes]
rs16853529	1.00[AMR][1000 genomes]
rs34043464	1.00[AMR][1000 genomes]
rs57334336	1.00[AMR][1000 genomes]
rs57687610	1.00[AMR][1000 genomes]
rs58810476	1.00[AMR][1000 genomes]
rs72992119	1.00[AMR][1000 genomes]
rs72992127	1.00[AMR][1000 genomes]
rs72992177	1.00[AMR][1000 genomes]
rs72992195	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7610768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv999000	chr3:143086325-143136128	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143100600-143142600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143129400-143140600	Weak transcription	NHDF-Ad	bronchial
3	chr3:143130800-143134200	Enhancers	Dnd41	blood
4	chr3:143130800-143135000	Enhancers	Fetal Thymus	thymus
5	chr3:143131000-143134400	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:143132400-143132800	Flanking Active TSS	GM12878-XiMat	blood
7	chr3:143132400-143133200	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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