Variant report

Variant	rs7299892
Chromosome Location	chr12:46394311-46394312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1291625	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1291628	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366023	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1427749	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183646	0.92[ASN][1000 genomes]
rs2114844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188119	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs247927	0.92[ASN][1000 genomes]
rs35123	0.89[ASN][1000 genomes]
rs35124	0.92[ASN][1000 genomes]
rs4768671	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6582578	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7309711	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs764192	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961085	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7973329	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875493	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975444	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv983463	chr12:46377328-46403983	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46389000-46394800	Weak transcription	HepG2	liver
2	chr12:46393800-46399400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:46393800-46399600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links