Variant report

Variant	rs73005930
Chromosome Location	chr1:151887837-151887838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6678366	0.84[AFR][1000 genomes]
rs6679547	0.85[AFR][1000 genomes]
rs6690651	0.85[AFR][1000 genomes]
rs73005923	1.00[AFR][1000 genomes]
rs73005925	1.00[AFR][1000 genomes]
rs73005928	1.00[AFR][1000 genomes]
rs73005932	1.00[AFR][1000 genomes]
rs73005933	1.00[AFR][1000 genomes]
rs73005953	0.86[AFR][1000 genomes]
rs73007992	0.85[AFR][1000 genomes]
rs73007999	0.85[AFR][1000 genomes]
rs73009645	0.85[AFR][1000 genomes]
rs73009654	0.85[AFR][1000 genomes]
rs73009658	0.85[AFR][1000 genomes]
rs73009663	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151883200-151892200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr1:151885800-151891200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:151886600-151889600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:151887200-151888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:151887200-151888200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:151887800-151888000	Enhancers	Hela-S3	cervix
7	chr1:151887800-151888200	Enhancers	Right Atrium	heart
8	chr1:151887800-151888200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:151887800-151889200	Enhancers	Aorta	Aorta
10	chr1:151887800-151889400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:151887800-151889400	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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