Variant report

Variant	rs73009658
Chromosome Location	chr1:151861842-151861843
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151861515..151862096-chr1:151973987..151974810,3	MCF-7	breast:
2	chr1:151860890..151862154-chr1:151973910..151974830,5	MCF-7	breast:
3	chr1:151861451..151862101-chr1:151985405..151986706,6	MCF-7	breast:
4	chr1:151861527..151862049-chr1:152006848..152007484,2	MCF-7	breast:
5	chr1:151861528..151864406-chr1:151963455..151965696,6	MCF-7	breast:
6	chr1:151861146..151861906-chr1:152006828..152007519,2	MCF-7	breast:
7	chr1:151858712..151862714-chr1:151863688..151869439,8	K562	blood:
8	chr1:151861047..151861926-chr1:151976278..151977205,2	MCF-7	breast:
9	chr1:151861330..151862021-chr1:151940185..151941034,3	MCF-7	breast:
10	chr1:151861522..151872673-chr1:151876647..151885029,20	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000159445	Chromatin interaction
ENSG00000197747	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6587642	0.85[AFR][1000 genomes]
rs6678366	0.84[AFR][1000 genomes]
rs6679547	1.00[AFR][1000 genomes]
rs6690651	1.00[AFR][1000 genomes]
rs72993621	0.85[AFR][1000 genomes]
rs72993637	0.85[AFR][1000 genomes]
rs73005923	0.85[AFR][1000 genomes]
rs73005925	0.85[AFR][1000 genomes]
rs73005928	0.85[AFR][1000 genomes]
rs73005930	0.85[AFR][1000 genomes]
rs73005932	0.85[AFR][1000 genomes]
rs73005933	0.85[AFR][1000 genomes]
rs73007992	1.00[AFR][1000 genomes]
rs73007999	1.00[AFR][1000 genomes]
rs73009645	1.00[AFR][1000 genomes]
rs73009654	1.00[AFR][1000 genomes]
rs73009663	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151831000-151881400	Weak transcription	Ovary	ovary
2	chr1:151840600-151864600	Weak transcription	NH-A	brain
3	chr1:151841200-151880800	Weak transcription	NHLF	lung
4	chr1:151841600-151864000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:151844000-151864600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:151844400-151866400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:151844400-151881200	Weak transcription	Aorta	Aorta
8	chr1:151844600-151863600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr1:151844600-151864200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:151844800-151863800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:151844800-151864200	Weak transcription	Pancreas	Pancrea
12	chr1:151844800-151870800	Weak transcription	Gastric	stomach
13	chr1:151844800-151871200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:151844800-151877600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:151845200-151863600	Weak transcription	Fetal Kidney	kidney
16	chr1:151845400-151871200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:151846000-151864200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:151846400-151865400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:151846400-151870400	Weak transcription	Right Ventricle	heart
20	chr1:151846400-151871600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:151846600-151864800	Weak transcription	Fetal Lung	lung
22	chr1:151846800-151863000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:151847000-151863800	Weak transcription	Fetal Thymus	thymus
24	chr1:151847000-151865000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr1:151847000-151869600	Weak transcription	Small Intestine	intestine
26	chr1:151847000-151871000	Weak transcription	Spleen	Spleen
27	chr1:151847400-151870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:151847600-151862000	Weak transcription	Adipose Nuclei	Adipose
29	chr1:151847800-151864000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:151848000-151863000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:151848400-151863600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr1:151850800-151864800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:151851000-151871200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:151851200-151862000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:151854000-151880200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:151854200-151863600	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:151854200-151864800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr1:151855000-151863000	Weak transcription	Placenta	Placenta
39	chr1:151857000-151873000	Weak transcription	GM12878-XiMat	blood
40	chr1:151857600-151864800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr1:151857600-151873400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:151857600-151874200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:151857800-151866600	Strong transcription	Fetal Muscle Trunk	muscle
44	chr1:151857800-151867800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:151857800-151868400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:151858000-151863200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr1:151858000-151864000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr1:151858000-151866400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr1:151858000-151867800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:151858000-151868000	Strong transcription	Fetal Intestine Large	intestine

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