Variant report

Variant	rs73007999
Chromosome Location	chr1:151921655-151921656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151920501..151922320-chr1:151962400..151965015,2	MCF-7	breast:
2	chr1:151919533..151922319-chr1:151932817..151935606,2	MCF-7	breast:
3	chr1:151918412..151920135-chr1:151920921..151922803,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6587642	0.85[AFR][1000 genomes]
rs6678366	0.84[AFR][1000 genomes]
rs6679547	1.00[AFR][1000 genomes]
rs6690651	1.00[AFR][1000 genomes]
rs72993621	0.85[AFR][1000 genomes]
rs72993637	0.85[AFR][1000 genomes]
rs73005923	0.85[AFR][1000 genomes]
rs73005925	0.85[AFR][1000 genomes]
rs73005928	0.85[AFR][1000 genomes]
rs73005930	0.85[AFR][1000 genomes]
rs73005932	0.85[AFR][1000 genomes]
rs73005933	0.85[AFR][1000 genomes]
rs73007992	1.00[AFR][1000 genomes]
rs73009645	1.00[AFR][1000 genomes]
rs73009654	1.00[AFR][1000 genomes]
rs73009658	1.00[AFR][1000 genomes]
rs73009663	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151914000-151922000	Weak transcription	Spleen	Spleen
2	chr1:151917600-151921800	Weak transcription	Lung	lung
3	chr1:151917600-151921800	Weak transcription	Pancreas	Pancrea
4	chr1:151918800-151925400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:151919000-151921800	Weak transcription	Ovary	ovary
6	chr1:151919200-151922000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:151919600-151921800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:151919600-151921800	Enhancers	Hela-S3	cervix
9	chr1:151919600-151922200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:151919600-151922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:151919600-151924800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:151919800-151921800	Weak transcription	HSMM	muscle
13	chr1:151919800-151922600	Weak transcription	Fetal Intestine Small	intestine
14	chr1:151919800-151925800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:151920000-151925000	Weak transcription	A549	lung
16	chr1:151920400-151922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr1:151921000-151921800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:151921200-151922000	Enhancers	Adipose Nuclei	Adipose
19	chr1:151921400-151922000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr1:151921400-151922000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:151921400-151922600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:151921600-151922000	Enhancers	Monocytes-CD14+_RO01746	blood

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