Variant report

Variant	rs73013688
Chromosome Location	chr3:157253448-157253449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16847092	1.00[AMR][1000 genomes]
rs56813077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57711198	1.00[AMR][1000 genomes]
rs58409217	1.00[AMR][1000 genomes]
rs59725665	1.00[AMR][1000 genomes]
rs73013648	1.00[AMR][1000 genomes]
rs73013690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73013700	1.00[AMR][1000 genomes]
rs73013701	1.00[AMR][1000 genomes]
rs73015513	1.00[AMR][1000 genomes]
rs73015516	1.00[AMR][1000 genomes]
rs73015533	1.00[AMR][1000 genomes]
rs73015537	1.00[AMR][1000 genomes]
rs73015558	1.00[AMR][1000 genomes]
rs73876320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157250000-157260000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:157251600-157253600	Enhancers	HUVEC	blood vessel
3	chr3:157252800-157259800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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