Variant report
| Variant | rs73015256 |
|---|---|
| Chromosome Location | chr3:161363978-161363979 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:161354917..161360014-chr3:161360082..161365935,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1399907 | 0.99[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73015264 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7623811 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7649699 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7652284 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9290086 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9826280 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9835551 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9851467 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9854161 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9863670 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs9873326 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004255 | chr3:161340249-161476537 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv2755105 | chr3:161349991-161371789 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | esv2754526 | chr3:161353644-161371789 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | nsv1012553 | chr3:161354221-161371789 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161361400-161367200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 2 | chr3:161361800-161367400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
