Variant report

Variant	rs7649699
Chromosome Location	chr3:161356709-161356710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1399907	0.88[AFR][1000 genomes]
rs73015256	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73015264	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7623811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7652284	0.87[AFR][1000 genomes]
rs9290086	0.87[AFR][1000 genomes]
rs9826280	0.87[AFR][1000 genomes]
rs9835551	0.87[AFR][1000 genomes]
rs9851467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9854161	0.87[AFR][1000 genomes]
rs9863670	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161353200-161359200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr3:161353400-161357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:161355000-161357000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:161355800-161359000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:161356000-161362800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:161356200-161358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:161356400-161356800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:161356600-161357800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:161356600-161360800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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