Variant report

Variant	rs9290086
Chromosome Location	chr3:161317345-161317346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1399907	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015256	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73015264	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7623811	0.87[AFR][1000 genomes]
rs7625098	0.85[AMR][1000 genomes]
rs7649699	0.87[AFR][1000 genomes]
rs7652284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9826280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9835551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851467	0.87[AFR][1000 genomes]
rs9854161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161316000-161318600	Enhancers	Dnd41	blood
2	chr3:161316600-161318200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:161316800-161318000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:161316800-161318000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:161316800-161319400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:161316800-161319600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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