Variant report

Variant	rs73015374
Chromosome Location	chr6:163880624-163880625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163873882..163876794-chr6:163877974..163880683,2	K562	blood:
2	chr6:163879929..163881986-chr6:163883834..163886314,2	K562	blood:
3	chr6:163878253..163881131-chr6:163881459..163884552,3	K562	blood:
4	chr6:163878553..163880705-chr6:163884842..163887651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3846779	1.00[ASN][1000 genomes]
rs62436724	1.00[ASN][1000 genomes]
rs73013601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023308	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023392	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458866	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
2	chr6:163865200-163881400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:163876600-163880800	Enhancers	Right Ventricle	heart
4	chr6:163876600-163881000	Enhancers	HSMMtube	muscle
5	chr6:163876800-163881200	Weak transcription	Fetal Brain Female	brain
6	chr6:163877400-163880800	Genic enhancers	Brain Hippocampus Middle	brain
7	chr6:163877600-163881200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:163877800-163881000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:163877800-163881000	Enhancers	NH-A	brain
10	chr6:163877800-163881800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:163878000-163880800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:163878000-163881800	Enhancers	HMEC	breast
13	chr6:163878200-163880800	Genic enhancers	GM12878-XiMat	blood
14	chr6:163878400-163881000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:163878400-163881200	Genic enhancers	K562	blood
16	chr6:163878600-163881000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:163878600-163881000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:163878600-163881200	Enhancers	Liver	Liver
19	chr6:163878600-163881200	Enhancers	HSMM	muscle
20	chr6:163878800-163881000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:163878800-163881000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:163878800-163881200	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:163878800-163881400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:163878800-163881400	Weak transcription	Placenta	Placenta
25	chr6:163878800-163910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:163879000-163880800	Enhancers	HUVEC	blood vessel
27	chr6:163879000-163881000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:163879000-163881000	Enhancers	NHDF-Ad	bronchial
29	chr6:163879200-163881200	Enhancers	Adipose Nuclei	Adipose
30	chr6:163879200-163881200	Enhancers	Brain Angular Gyrus	brain
31	chr6:163879200-163881200	Enhancers	NHEK	skin
32	chr6:163879200-163881400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:163879200-163881400	Weak transcription	Colonic Mucosa	Colon
34	chr6:163879200-163891000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:163879200-163891200	Weak transcription	Fetal Kidney	kidney
36	chr6:163879400-163881000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:163879400-163881200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:163879400-163881400	Weak transcription	Fetal Lung	lung
39	chr6:163879400-163884200	Weak transcription	HepG2	liver
40	chr6:163879400-163891000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:163879600-163881000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:163879600-163881200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:163879600-163881200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr6:163879600-163881200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr6:163879600-163881400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:163879600-163881400	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:163879800-163880800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:163879800-163880800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:163879800-163880800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:163879800-163881000	Enhancers	NHLF	lung

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