Variant report

Variant	rs73015391
Chromosome Location	chr6:163891789-163891790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163890293..163893385-chr6:163894823..163897543,3	K562	blood:
2	chr6:163833418..163836921-chr6:163889565..163892236,3	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3846779	1.00[ASN][1000 genomes]
rs62436724	1.00[ASN][1000 genomes]
rs73013601	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023308	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023392	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458866	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv523664	chr6:163858237-163907885	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163878800-163910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:163880600-163896600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:163880600-163897600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:163880600-163903200	Weak transcription	Pancreas	Pancrea
5	chr6:163880600-163906600	Weak transcription	Gastric	stomach
6	chr6:163881800-163897600	Weak transcription	Ovary	ovary
7	chr6:163881800-163901000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:163881800-163910800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:163882000-163899800	Weak transcription	Placenta	Placenta
10	chr6:163882000-163900000	Weak transcription	Fetal Thymus	thymus
11	chr6:163882000-163906600	Weak transcription	Thymus	Thymus
12	chr6:163883000-163895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:163883000-163900800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:163883000-163900800	Weak transcription	NH-A	brain
15	chr6:163883000-163906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:163883800-163897000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:163884000-163895800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:163885200-163893000	Weak transcription	Right Ventricle	heart
19	chr6:163887200-163893000	Weak transcription	Psoas Muscle	Psoas
20	chr6:163887200-163900000	Weak transcription	Fetal Stomach	stomach
21	chr6:163888400-163892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:163888400-163893200	Weak transcription	Left Ventricle	heart
23	chr6:163888400-163902800	Weak transcription	Right Atrium	heart
24	chr6:163888400-163908200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:163889400-163897400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:163890000-163891800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:163890000-163892600	ZNF genes & repeats	GM12878-XiMat	blood
28	chr6:163890000-163893200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:163890000-163893400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:163890000-163900200	Weak transcription	Liver	Liver
31	chr6:163890000-163906200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:163890200-163892400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:163890200-163892600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
34	chr6:163890200-163892800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr6:163890200-163892800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr6:163890400-163892200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:163890400-163892400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr6:163890400-163892600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:163890600-163891800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:163890600-163892000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr6:163890600-163892400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr6:163890600-163892400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:163890600-163892400	ZNF genes & repeats	HepG2	liver
44	chr6:163890600-163892800	ZNF genes & repeats	A549	lung
45	chr6:163890600-163893000	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:163890600-163893200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr6:163890800-163891800	Genic enhancers	Brain Hippocampus Middle	brain
48	chr6:163890800-163892000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:163890800-163892000	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr6:163890800-163892400	Weak transcription	Brain Inferior Temporal Lobe	brain

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