Variant report

Variant	rs73020789
Chromosome Location	chr19:28238069-28238070
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:28237996-28238224	MCF-7	breast:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
2	CTCF	chr19:28237920-28238070	HEEpiC	esophagus:	n/a	n/a
3	CTCF	chr19:28238002-28238169	ProgFib	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
4	CTCF	chr19:28237978-28238243	IMR90	lung:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
5	CTCF	chr19:28238020-28238170	HRE	kidney:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
6	CTCF	chr19:28237980-28238130	Caco-2	colon:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
7	CTCF	chr19:28238060-28238210	HPF	lung:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
8	CTCF	chr19:28238040-28238190	GM12873	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
9	CTCF	chr19:28238020-28238170	HBMEC	blood vessel:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
10	CTCF	chr19:28238060-28238210	NHLF	lung:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
11	RAD21	chr19:28237906-28238286	H1-hESC	embryonic stem cell:	n/a	chr19:28238093-28238112 chr19:28238091-28238104 chr19:28238094-28238108
12	CTCF	chr19:28237976-28238230	MCF-7	breast:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
13	CTCF	chr19:28237920-28238070	HAc	cerebellar:	n/a	n/a
14	CTCF	chr19:28238000-28238150	NHEK	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
15	CTCF	chr19:28238040-28238190	HBMEC	blood vessel:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
16	CTCF	chr19:28238040-28238190	HEEpiC	esophagus:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
17	CTCF	chr19:28237980-28238130	HRE	kidney:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
18	POLR2A	chr19:28237989-28238091	MCF-7	breast:	n/a	n/a
19	MAZ	chr19:28238069-28238118	K562	blood:	n/a	n/a
20	CTCF	chr19:28237960-28238110	AG04449	skin:	n/a	chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
21	CTCF	chr19:28238040-28238190	A549	lung:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
22	CTCF	chr19:28238015-28238215	GM12878	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
23	CTCF	chr19:28237980-28238224	H1-hESC	embryonic stem cell:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
24	CTCF	chr19:28237972-28238252	MCF-7	breast:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
25	CTCF	chr19:28238040-28238190	HEK293	kidney:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
26	RAD21	chr19:28237844-28238259	H1-hESC	embryonic stem cell:	n/a	chr19:28238093-28238112 chr19:28238091-28238104 chr19:28238094-28238108
27	MYC	chr19:28238030-28238126	MCF-7	breast:	n/a	n/a
28	CTCF	chr19:28238040-28238190	GM12865	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
29	CTCF	chr19:28238040-28238190	HA-sp	spinal cord:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
30	CTCF	chr19:28238060-28238210	AG09319	gingival:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
31	CTCF	chr19:28238020-28238170	HFF	foreskin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
32	CTCF	chr19:28238020-28238170	GM12873	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
33	CTCF	chr19:28237972-28238239	Fibrobl	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
34	CTCF	chr19:28237956-28238272	H1-hESC	embryonic stem cell:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
35	CTCF	chr19:28238000-28238150	GM12871	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
36	CTCF	chr19:28238051-28238176	GM12891	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
37	CTCF	chr19:28238000-28238150	BJ	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
38	CTCF	chr19:28238040-28238190	NHEK	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
39	CTCF	chr19:28238000-28238150	GM12870	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
40	CTCF	chr19:28237940-28238090	HAc	cerebellar:	n/a	n/a
41	CTCF	chr19:28238040-28238190	AoAF	blood vessel:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
42	CTCF	chr19:28238000-28238150	GM12874	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
43	CTCF	chr19:28238040-28238190	GM12878	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
44	ZNF143	chr19:28237960-28238278	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr19:28238040-28238190	HCPEpiC	choroid plexus:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
46	CTCF	chr19:28237920-28238070	GM12869	blood:	n/a	n/a
47	CTCF	chr19:28238060-28238210	HMEC	breast:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
48	CTCF	chr19:28238031-28238138	GM10266	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
49	CTCF	chr19:28237980-28238130	AG04449	skin:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105
50	CTCF	chr19:28238042-28238148	K562	blood:	n/a	chr19:28238099-28238112 chr19:28238095-28238108 chr19:28238092-28238110 chr19:28238092-28238105

Variant related genes	Relation type
LINC00662	TF binding region

Extended variants
information (count: 167 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10417790	0.90[EUR][1000 genomes]
rs10500227	1.00[ASN][1000 genomes]
rs10500228	1.00[ASN][1000 genomes]
rs1073627	0.91[EUR][1000 genomes]
rs11665672	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11665757	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11666317	1.00[ASN][1000 genomes]
rs11666634	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11666844	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11666865	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11667445	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667490	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667773	1.00[ASN][1000 genomes]
rs11667808	1.00[ASN][1000 genomes]
rs11667843	1.00[ASN][1000 genomes]
rs11668375	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11669594	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11670170	1.00[ASN][1000 genomes]
rs11670363	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11670416	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11671105	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11671558	1.00[ASN][1000 genomes]
rs11671577	1.00[ASN][1000 genomes]
rs11671795	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11672030	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11672539	1.00[ASN][1000 genomes]
rs11672752	1.00[ASN][1000 genomes]
rs11672926	1.00[ASN][1000 genomes]
rs11673143	0.89[EUR][1000 genomes]
rs1544602	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1594018	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594020	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17620388	1.00[ASN][1000 genomes]
rs17687460	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1835070	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966408	0.89[EUR][1000 genomes]
rs4378721	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452072	0.91[EUR][1000 genomes]
rs4458124	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61593976	1.00[ASN][1000 genomes]
rs66768093	0.84[EUR][1000 genomes]
rs67359244	0.84[EUR][1000 genomes]
rs7252041	0.91[EUR][1000 genomes]
rs7255769	0.91[EUR][1000 genomes]
rs73014609	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014670	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014693	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014697	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014700	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014702	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73016608	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016611	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016615	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73016681	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73016690	0.89[EUR][1000 genomes]
rs73018707	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018712	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73018714	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018757	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73018758	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018762	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73018774	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73018790	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73020750	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73020753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73020775	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73022706	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024749	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024764	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73024769	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73024774	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026847	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026853	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026867	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026884	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73026890	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73028128	1.00[ASN][1000 genomes]
rs73028161	1.00[ASN][1000 genomes]
rs73028162	1.00[ASN][1000 genomes]
rs73028959	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73028970	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73030458	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73030461	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73030462	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73030472	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73030497	0.87[EUR][1000 genomes]
rs73030498	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032204	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032210	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032213	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032248	1.00[ASN][1000 genomes]
rs73032250	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032265	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73033898	1.00[ASN][1000 genomes]
rs73035818	1.00[ASN][1000 genomes]
rs73035836	1.00[ASN][1000 genomes]
rs73035838	1.00[ASN][1000 genomes]
rs73035863	1.00[ASN][1000 genomes]
rs73037829	1.00[ASN][1000 genomes]
rs741081	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs764366	1.00[ASN][1000 genomes]
rs8107228	0.89[EUR][1000 genomes]
rs9789292	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv1060017	chr19:27747981-28249070	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1060889	chr19:27747981-28256350	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1066699	chr19:27747981-28273601	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1060674	chr19:27747981-28299996	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1065481	chr19:27747981-28413175	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1059366	chr19:27747981-28414634	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1058373	chr19:27747981-28491356	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv1061090	chr19:27747981-28682929	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv911509	chr19:27763440-28269366	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv911510	chr19:27763440-28330908	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv911511	chr19:27763440-28468209	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv911512	chr19:27763440-28484676	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
14	nsv911513	chr19:27763440-28491875	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
15	nsv911514	chr19:27763440-28496053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
16	nsv579127	chr19:27778828-28274509	ZNF genes & repeats Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
17	nsv911523	chr19:27794208-28468209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv911524	chr19:27794208-28484676	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	nsv911525	chr19:27794208-28491875	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
20	nsv911526	chr19:27794208-28496053	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
21	nsv1063232	chr19:27853206-28569858	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
22	nsv543972	chr19:27853206-28569858	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
23	nsv1055749	chr19:27853206-28740895	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
24	nsv543973	chr19:27853206-28740895	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
25	nsv1067798	chr19:27853207-28431843	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
26	nsv498156	chr19:27853207-28431843	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
27	nsv868982	chr19:27853207-28483508	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
28	nsv930989	chr19:27853207-28569857	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
29	nsv532819	chr19:27853207-28664723	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
30	nsv530474	chr19:27853207-28740894	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	nsv916250	chr19:27853209-28483527	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
32	nsv911535	chr19:27861995-28491875	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
33	nsv911536	chr19:27861995-28496053	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
34	esv2762966	chr19:27881186-28539281	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
35	nsv911542	chr19:27893661-28269366	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
36	nsv911543	chr19:27893661-28496053	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
37	nsv1056594	chr19:27919584-28249024	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
38	nsv1062168	chr19:27919584-28460526	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
39	nsv543976	chr19:27919584-28460526	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
40	nsv1058421	chr19:27919584-28491356	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
41	nsv543977	chr19:27919584-28491356	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
42	nsv1061318	chr19:27919584-28509647	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
43	nsv543978	chr19:27919584-28509647	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv1060373	chr19:27919584-28530216	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
45	nsv1055340	chr19:27919584-28755810	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
46	nsv1063211	chr19:27919584-28777862	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
47	nsv543979	chr19:27919584-28777862	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
48	nsv1059604	chr19:27919584-28814901	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
49	nsv1064493	chr19:27919584-28837984	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
50	nsv911548	chr19:27948862-28845130	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs73020789	CTC-459F4.1	cis	Stomach	GTEx
rs73020789	CTC-459F4.1	cis	Adipose Subcutaneous	GTEx
rs73020789	CTC-459F4.1	cis	Artery Aorta	GTEx
rs73020789	CTC-459F4.1	cis	Esophagus Mucosa	GTEx
rs73020789	LINC00662	cis	Whole Blood	GTEx
rs73020789	CTC-459F4.1	cis	Esophagus Muscularis	GTEx
rs73020789	CTC-459F4.1	cis	Skin Sun Exposed Lower leg	GTEx
rs73020789	CTC-459F4.1	cis	Thyroid	GTEx
rs73020789	CTC-459F4.1	cis	Heart Left Ventricle	GTEx
rs73020789	CTC-459F4.1	cis	Muscle Skeletal	GTEx
rs73020789	CTC-459F4.1	cis	Artery Tibial	GTEx
rs73020789	CTC-459F4.1	cis	lung	GTEx
rs73020789	CTC-459F4.1	cis	Nerve Tibial	GTEx

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:28223600-28238200	ZNF genes & repeats	Brain Germinal Matrix	brain
2	chr19:28223600-28238800	ZNF genes & repeats	Fetal Brain Female	brain
3	chr19:28224200-28238200	ZNF genes & repeats	Aorta	Aorta
4	chr19:28227800-28241200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr19:28230800-28238200	Weak transcription	A549	lung
6	chr19:28231400-28238400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:28235400-28238200	Enhancers	Left Ventricle	heart
8	chr19:28235600-28238200	Enhancers	Psoas Muscle	Psoas
9	chr19:28235600-28238200	Enhancers	Right Ventricle	heart
10	chr19:28235800-28238200	Enhancers	HSMM	muscle
11	chr19:28237000-28238200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:28237000-28238200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:28237000-28238200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
14	chr19:28237000-28238200	ZNF genes & repeats	Lung	lung
15	chr19:28237400-28238600	Enhancers	Fetal Heart	heart
16	chr19:28237400-28239200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:28237600-28238200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:28237600-28238200	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr19:28237600-28238200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr19:28237800-28238200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
21	chr19:28237800-28238200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:28237800-28238200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr19:28237800-28238200	Active TSS	Primary hematopoietic stem cells	blood
24	chr19:28237800-28238200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr19:28237800-28238200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr19:28237800-28238200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr19:28237800-28238200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:28237800-28238200	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr19:28237800-28238200	Active TSS	Brain Anterior Caudate	brain
30	chr19:28237800-28238200	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr19:28237800-28238200	Enhancers	Fetal Muscle Leg	muscle
32	chr19:28237800-28238200	Flanking Active TSS	Ovary	ovary
33	chr19:28237800-28238200	Active TSS	Rectal Smooth Muscle	rectum
34	chr19:28237800-28238200	Flanking Active TSS	Right Atrium	heart
35	chr19:28237800-28238200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr19:28237800-28238200	Active TSS	Osteobl	bone
37	chr19:28237800-28242200	Weak transcription	HSMMtube	muscle
38	chr19:28238000-28238200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:28238000-28238200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:28238000-28238200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:28238000-28238200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:28238000-28238200	Active TSS	Brain Angular Gyrus	brain
43	chr19:28238000-28238200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr19:28238000-28238200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:28238000-28238200	Active TSS	Brain Substantia Nigra	brain
46	chr19:28238000-28238200	Active TSS	Colon Smooth Muscle	Colon
47	chr19:28238000-28238200	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr19:28238000-28238200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr19:28238000-28238200	Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr19:28238000-28238200	Enhancers	Spleen	Spleen

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