Variant report

Variant	rs73023398
Chromosome Location	chr6:164009712-164009713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:164009085-164009748	SK-N-SH	brain:	n/a	n/a
2	FOS	chr6:164008345-164009834	MCF10A-Er-Src	breast:	n/a	chr6:164008983-164008994 chr6:164009661-164009672
3	PBX3	chr6:164009252-164009746	SK-N-SH	brain:	n/a	n/a
4	MAX	chr6:164009210-164009738	HCT-116	colon:	n/a	n/a
5	TCF12	chr6:164009078-164009744	SK-N-SH	brain:	n/a	n/a
6	EP300	chr6:164008308-164009786	SK-N-SH	brain:	n/a	n/a
7	CEBPB	chr6:164008788-164009717	HCT-116	colon:	n/a	n/a
8	POLR2A	chr6:164009698-164010345	HepG2	liver:	n/a	n/a
9	MAX	chr6:164008787-164009761	HCT-116	colon:	n/a	n/a
10	SP1	chr6:164008790-164009742	HCT-116	colon:	n/a	n/a

Variant related genes	Relation type
ENSG00000228692	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17446816	1.00[ASN][1000 genomes]
rs34872516	1.00[ASN][1000 genomes]
rs66492083	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163998200-164010800	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:164003800-164010000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:164006800-164010000	Enhancers	HMEC	breast
4	chr6:164007000-164009800	Enhancers	Hela-S3	cervix
5	chr6:164007200-164010200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:164007200-164010400	Enhancers	HSMMtube	muscle
7	chr6:164007400-164011000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr6:164007800-164010000	Enhancers	Lung	lung
9	chr6:164007800-164010600	Weak transcription	Fetal Heart	heart
10	chr6:164008000-164009800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:164008200-164009800	Weak transcription	Psoas Muscle	Psoas
12	chr6:164008200-164011400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:164008400-164010000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:164008600-164009800	Enhancers	NHEK	skin
15	chr6:164008600-164010000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:164008600-164010000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:164008600-164010200	Enhancers	Brain Angular Gyrus	brain
18	chr6:164008600-164010200	Enhancers	NH-A	brain
19	chr6:164008800-164009800	Enhancers	Left Ventricle	heart
20	chr6:164008800-164010000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:164008800-164010000	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:164009000-164010000	Enhancers	HSMM	muscle
23	chr6:164009200-164010200	Weak transcription	HUVEC	blood vessel
24	chr6:164009200-164011200	Enhancers	Brain Anterior Caudate	brain
25	chr6:164009400-164010200	Flanking Active TSS	Brain Hippocampus Middle	brain
26	chr6:164009400-164010200	Enhancers	Fetal Muscle Leg	muscle
27	chr6:164009600-164009800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:164009600-164009800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr6:164009600-164009800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:164009600-164009800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr6:164009600-164010000	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr6:164009600-164011000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr6:164009600-164011600	Weak transcription	Right Ventricle	heart

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