Variant report

Variant	rs17446816
Chromosome Location	chr6:164027927-164027928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1003528	1.00[CHB][hapmap]
rs1016501	1.00[CHB][hapmap]
rs1016502	1.00[CHB][hapmap]
rs1040514	1.00[CHB][hapmap]
rs1047944	1.00[CHB][hapmap]
rs10945908	0.82[AMR][1000 genomes]
rs12189941	0.82[AMR][1000 genomes]
rs12190194	0.86[AMR][1000 genomes]
rs12190195	0.82[AMR][1000 genomes]
rs12199831	0.82[AMR][1000 genomes]
rs12203750	0.82[AMR][1000 genomes]
rs12212261	0.82[AMR][1000 genomes]
rs12212838	0.82[AMR][1000 genomes]
rs1230321	1.00[CHB][hapmap]
rs1234603	1.00[CHB][hapmap]
rs1234604	1.00[CHB][hapmap]
rs13195095	0.82[AMR][1000 genomes]
rs1619076	1.00[CHB][hapmap]
rs1737600	1.00[CHB][hapmap]
rs1737601	1.00[CHB][hapmap]
rs1737603	1.00[CHB][hapmap]
rs1737604	1.00[CHB][hapmap]
rs1737606	1.00[CHB][hapmap]
rs1737607	1.00[CHB][hapmap]
rs1737611	1.00[CHB][hapmap]
rs1744924	1.00[CHB][hapmap]
rs1744925	1.00[CHB][hapmap]
rs1744926	1.00[CHB][hapmap]
rs1744927	1.00[CHB][hapmap]
rs1744933	1.00[CHB][hapmap]
rs2038147	1.00[CHB][hapmap]
rs2057003	1.00[CHB][hapmap]
rs2092406	1.00[CHB][hapmap]
rs2179524	1.00[CHB][hapmap]
rs2321702	1.00[CHB][hapmap]
rs2745364	1.00[CHB][hapmap]
rs2757580	1.00[CHB][hapmap]
rs2757581	1.00[CHB][hapmap]
rs2757586	1.00[CHB][hapmap]
rs2757587	1.00[CHB][hapmap]
rs2757588	1.00[CHB][hapmap]
rs2757589	1.00[CHB][hapmap]
rs2759383	1.00[CHB][hapmap]
rs2759384	1.00[CHB][hapmap]
rs2759385	1.00[CHB][hapmap]
rs2759387	1.00[CHB][hapmap]
rs2759388	1.00[CHB][hapmap]
rs2759390	1.00[CHB][hapmap]
rs2759391	1.00[CHB][hapmap]
rs2759392	1.00[CHB][hapmap]
rs2759395	1.00[CHB][hapmap]
rs2784865	1.00[CHB][hapmap]
rs2784867	1.00[CHB][hapmap]
rs2874602	1.00[CHB][hapmap]
rs34872516	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36050623	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4708997	1.00[CHB][hapmap]
rs6455902	1.00[CHB][hapmap]
rs66492083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909364	1.00[CHB][hapmap]
rs6914387	1.00[CHB][hapmap]
rs6924130	1.00[CHB][hapmap]
rs6926584	1.00[CHB][hapmap]
rs6931049	1.00[CHB][hapmap]
rs721190	1.00[CHB][hapmap]
rs721191	1.00[CHB][hapmap]
rs73023398	1.00[ASN][1000 genomes]
rs7749189	1.00[CHB][hapmap]
rs7752945	1.00[CHB][hapmap]
rs7761088	1.00[CHB][hapmap]
rs7768051	1.00[CHB][hapmap]
rs7769145	1.00[CHB][hapmap]
rs7776279	1.00[CHB][hapmap]
rs783136	1.00[CHB][hapmap]
rs783138	1.00[CHB][hapmap]
rs783140	1.00[CHB][hapmap]
rs813640	1.00[CHB][hapmap]
rs814143	1.00[CHB][hapmap]
rs9295222	1.00[CHB][hapmap]
rs9295223	1.00[CHB][hapmap]
rs9295224	1.00[CHB][hapmap]
rs9347754	1.00[CHB][hapmap]
rs9347755	1.00[CHB][hapmap]
rs9347756	1.00[CHB][hapmap]
rs9355431	0.82[AMR][1000 genomes]
rs9356117	1.00[CHB][hapmap]
rs9356119	1.00[CHB][hapmap]
rs9364695	0.82[AMR][1000 genomes]
rs9365573	1.00[CHB][hapmap]
rs9365577	1.00[CHB][hapmap]
rs9365584	0.82[AMR][1000 genomes]
rs9365585	0.82[AMR][1000 genomes]
rs9365586	0.81[AMR][1000 genomes]
rs9456869	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164024800-164029000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:164027400-164030000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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