Variant report

Variant rs1040514
Chromosome Location chr6:163927542-163927543
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:163911600-163928000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr6:163911800-163934800 Weak transcription Pancreas Pancrea
3 chr6:163913000-163928000 Weak transcription HUVEC blood vessel
4 chr6:163915600-163928000 Weak transcription Osteobl bone
5 chr6:163916000-163929200 Weak transcription Muscle Satellite Cultured Cells --
6 chr6:163916200-163928200 Enhancers Brain Substantia Nigra brain
7 chr6:163917000-163928000 Weak transcription Liver Liver
8 chr6:163920200-163934800 Weak transcription Ovary ovary
9 chr6:163921400-163928000 Weak transcription NHLF lung
10 chr6:163922200-163928000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr6:163922800-163928000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr6:163922800-163928400 Weak transcription Rectal Smooth Muscle rectum
13 chr6:163923000-163927800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr6:163923000-163928800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr6:163923800-163929800 Enhancers Brain Hippocampus Middle brain
16 chr6:163924400-163931600 Weak transcription Aorta Aorta
17 chr6:163925000-163929400 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
18 chr6:163925200-163928600 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
19 chr6:163925200-163928800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr6:163925400-163928600 Enhancers Fetal Heart heart
21 chr6:163925400-163931000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr6:163925600-163929400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr6:163925600-163929600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
24 chr6:163925600-163929600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
25 chr6:163925600-163930600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr6:163925800-163928600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr6:163925800-163929600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
28 chr6:163926000-163929200 ZNF genes & repeats Primary B cells from peripheral blood blood
29 chr6:163926000-163929400 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr6:163926000-163930600 ZNF genes & repeats Fetal Muscle Leg muscle
31 chr6:163926400-163928600 ZNF genes & repeats GM12878-XiMat blood
32 chr6:163926600-163928000 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr6:163926600-163928000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr6:163926600-163928600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr6:163926600-163929200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr6:163926600-163934800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr6:163926600-163934800 Weak transcription Lung lung
38 chr6:163926600-163934800 Weak transcription Psoas Muscle Psoas
39 chr6:163926600-163934800 Weak transcription Right Atrium heart
40 chr6:163926600-163946200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr6:163926600-163946600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr6:163926600-163991800 Weak transcription Esophagus oesophagus
43 chr6:163926800-163927600 Weak transcription Brain Anterior Caudate brain
44 chr6:163926800-163927800 Weak transcription Primary hematopoietic stem cells blood
45 chr6:163926800-163928000 Weak transcription Adipose Nuclei Adipose
46 chr6:163926800-163928000 Weak transcription Brain Angular Gyrus brain
47 chr6:163926800-163930200 Strong transcription Cortex derived primary cultured neurospheres brain
48 chr6:163926800-163931400 Weak transcription Skeletal Muscle Male skeletal muscle
49 chr6:163926800-163934800 Weak transcription Right Ventricle heart
50 chr6:163927000-163927600 Weak transcription Monocytes-CD14+_RO01746 blood

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