The 2.0 version of rSNPBase

Variant report

Variant rs56721804
Chromosome Location chr6:163748540-163748541
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:30 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:163732000-163749600 Weak transcription Spleen Spleen
2 chr6:163743400-163748600 Weak transcription Left Ventricle heart
3 chr6:163743400-163749600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr6:163744200-163751000 Weak transcription Right Atrium heart
5 chr6:163745000-163753200 Weak transcription Right Ventricle heart
6 chr6:163745200-163767000 Enhancers Brain Inferior Temporal Lobe brain
7 chr6:163745600-163773600 Enhancers Brain Substantia Nigra brain
8 chr6:163745800-163754000 Enhancers Brain Angular Gyrus brain
9 chr6:163746400-163748600 Weak transcription Fetal Muscle Trunk muscle
10 chr6:163746400-163755200 Weak transcription Psoas Muscle Psoas
11 chr6:163746600-163748600 Weak transcription Fetal Muscle Leg muscle
12 chr6:163746600-163749400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr6:163746600-163750800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr6:163746600-163750800 Weak transcription Muscle Satellite Cultured Cells --
15 chr6:163746600-163750800 Weak transcription Adipose Nuclei Adipose
16 chr6:163746600-163750800 Weak transcription NH-A brain
17 chr6:163746600-163751000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr6:163746600-163751200 Weak transcription Fetal Heart heart
19 chr6:163746600-163753400 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr6:163746600-163759400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr6:163746600-163759800 Enhancers Brain Anterior Caudate brain
22 chr6:163746600-163759800 Enhancers Brain Hippocampus Middle brain
23 chr6:163746600-163764400 Enhancers Brain Cingulate Gyrus brain
24 chr6:163746800-163751000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr6:163746800-163751000 Weak transcription HSMM muscle
26 chr6:163746800-163754200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr6:163747200-163748600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr6:163747400-163750800 Weak transcription A549 lung
29 chr6:163747600-163748600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr6:163748400-163748800 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015