The 2.0 version of rSNPBase

Variant report

Variant rs2179523
Chromosome Location chr6:163934947-163934948
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:163926600-163946200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr6:163926600-163946600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr6:163926600-163991800 Weak transcription Esophagus oesophagus
4 chr6:163927200-163951600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr6:163928200-163951600 Weak transcription Spleen Spleen
6 chr6:163928600-163938400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr6:163928600-163941000 Weak transcription Rectal Smooth Muscle rectum
8 chr6:163928800-163942800 Weak transcription HSMM muscle
9 chr6:163928800-163944000 Weak transcription Primary hematopoietic stem cells blood
10 chr6:163928800-163946600 Weak transcription HUVEC blood vessel
11 chr6:163929000-163938000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr6:163929000-163947200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:163929200-163946600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr6:163929200-163946800 Weak transcription HMEC breast
15 chr6:163929400-163943800 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr6:163929400-163946600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr6:163929600-163940000 Weak transcription Muscle Satellite Cultured Cells --
18 chr6:163929600-163947200 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr6:163929600-163950800 Weak transcription Fetal Lung lung
20 chr6:163929600-163951600 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr6:163929800-163957000 Weak transcription Primary B cells from cord blood blood
22 chr6:163930400-163940400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr6:163930400-163941000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
24 chr6:163930600-163938000 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr6:163930600-163943600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr6:163930600-163950200 Weak transcription Fetal Muscle Leg muscle
27 chr6:163933200-163935000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr6:163933200-163935200 Enhancers Brain Anterior Caudate brain
29 chr6:163933200-163935200 Enhancers Skeletal Muscle Male skeletal muscle
30 chr6:163933400-163939800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
31 chr6:163933800-163937800 Weak transcription Colon Smooth Muscle Colon
32 chr6:163934000-163935000 Flanking Active TSS K562 blood
33 chr6:163934000-163935200 Genic enhancers H9 Derived Neuron Cultured Cells ES cell derived
34 chr6:163934000-163937800 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr6:163934000-163939800 Enhancers Fetal Heart heart
36 chr6:163934200-163935200 Enhancers A549 lung
37 chr6:163934200-163935200 Enhancers HepG2 liver
38 chr6:163934200-163935800 Enhancers Brain Substantia Nigra brain
39 chr6:163934200-163946600 Weak transcription NHEK skin
40 chr6:163934200-163949200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr6:163934600-163935200 Genic enhancers Brain Hippocampus Middle brain
42 chr6:163934600-163935200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
43 chr6:163934600-163935200 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr6:163934600-163935400 Enhancers Liver Liver
45 chr6:163934800-163935000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
46 chr6:163934800-163935000 Enhancers Brain Inferior Temporal Lobe brain
47 chr6:163934800-163935000 Enhancers Pancreas Pancrea
48 chr6:163934800-163935200 Enhancers H1 Cell Line embryonic stem cell
49 chr6:163934800-163935200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr6:163934800-163935200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015