Variant report

Variant	rs9355427
Chromosome Location	chr6:163779672-163779673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1016501	1.00[CHB][hapmap]
rs1016502	1.00[CHB][hapmap]
rs1040514	1.00[CHB][hapmap]
rs1230321	1.00[CHB][hapmap]
rs1234603	1.00[CHB][hapmap]
rs1234604	1.00[CHB][hapmap]
rs13194411	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1619076	1.00[CHB][hapmap]
rs1629251	1.00[CHB][hapmap]
rs1737311	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1737317	1.00[CHB][hapmap]
rs1737323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1737329	1.00[CHB][hapmap]
rs1737333	1.00[CHB][hapmap]
rs1737600	1.00[CHB][hapmap]
rs1737601	1.00[CHB][hapmap]
rs1737603	1.00[CHB][hapmap]
rs1737604	1.00[CHB][hapmap]
rs1737606	1.00[CHB][hapmap]
rs1737607	1.00[CHB][hapmap]
rs1737611	1.00[CHB][hapmap]
rs1744924	1.00[CHB][hapmap]
rs1744925	1.00[CHB][hapmap]
rs1744926	1.00[CHB][hapmap]
rs1744927	1.00[CHB][hapmap]
rs1744933	1.00[CHB][hapmap]
rs1763999	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1764008	1.00[CHB][hapmap]
rs2038147	1.00[CHB][hapmap]
rs2092406	1.00[CHB][hapmap]
rs2179524	1.00[CHB][hapmap]
rs2321702	1.00[CHB][hapmap]
rs2745364	1.00[CHB][hapmap]
rs2757580	1.00[CHB][hapmap]
rs2757581	1.00[CHB][hapmap]
rs2757586	1.00[CHB][hapmap]
rs2757587	1.00[CHB][hapmap]
rs2757588	1.00[CHB][hapmap]
rs2757589	1.00[CHB][hapmap]
rs2759383	1.00[CHB][hapmap]
rs2759384	1.00[CHB][hapmap]
rs2759385	1.00[CHB][hapmap]
rs2759387	1.00[CHB][hapmap]
rs2759388	1.00[CHB][hapmap]
rs2759390	1.00[CHB][hapmap]
rs2759391	1.00[CHB][hapmap]
rs2759392	1.00[CHB][hapmap]
rs2759395	1.00[CHB][hapmap]
rs2784865	1.00[CHB][hapmap]
rs2784867	1.00[CHB][hapmap]
rs2784874	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2874602	1.00[CHB][hapmap]
rs4708997	1.00[CHB][hapmap]
rs4709712	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455902	1.00[CHB][hapmap]
rs6905064	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6914387	1.00[CHB][hapmap]
rs6920269	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6922650	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924130	1.00[CHB][hapmap]
rs6926584	1.00[CHB][hapmap]
rs721190	1.00[CHB][hapmap]
rs721191	1.00[CHB][hapmap]
rs735751	0.80[AMR][1000 genomes]
rs7749189	1.00[CHB][hapmap]
rs7761088	1.00[CHB][hapmap]
rs7768051	1.00[CHB][hapmap]
rs783136	1.00[CHB][hapmap]
rs783138	1.00[CHB][hapmap]
rs783140	1.00[CHB][hapmap]
rs813640	1.00[CHB][hapmap]
rs814143	1.00[CHB][hapmap]
rs878423	0.86[CEU][hapmap]
rs878424	0.86[CEU][hapmap]
rs9295222	1.00[CHB][hapmap]
rs9295223	1.00[CHB][hapmap]
rs9295224	1.00[CHB][hapmap]
rs9346957	0.90[ASN][1000 genomes]
rs9347743	0.90[ASN][1000 genomes]
rs9347754	1.00[CHB][hapmap]
rs9347755	1.00[CHB][hapmap]
rs9347756	1.00[CHB][hapmap]
rs9356117	1.00[CHB][hapmap]
rs9365560	0.90[ASN][1000 genomes]
rs9365561	0.90[ASN][1000 genomes]
rs9365573	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163776400-163783400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:163777400-163780000	Weak transcription	Right Ventricle	heart
3	chr6:163777400-163786800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:163777400-163787400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:163777400-163790000	Weak transcription	Spleen	Spleen
6	chr6:163777400-163791400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:163777600-163781400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:163778000-163788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:163778400-163780200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:163778400-163781400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:163778400-163781600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:163778400-163782000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:163778400-163783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:163778400-163790800	Weak transcription	Right Atrium	heart
15	chr6:163778600-163780000	Weak transcription	Brain Angular Gyrus	brain
16	chr6:163778600-163782000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:163778600-163783400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:163779400-163780200	Enhancers	Brain Hippocampus Middle	brain
19	chr6:163779400-163780400	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:163779400-163780400	Enhancers	Left Ventricle	heart
21	chr6:163779400-163780800	Enhancers	Fetal Muscle Leg	muscle
22	chr6:163779600-163779800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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