Variant report

Variant	rs878423
Chromosome Location	chr6:163768782-163768783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163766963..163769650-chr6:163833960..163836613,2	MCF-7	breast:
2	chr6:163760779..163762699-chr6:163768493..163770120,2	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2143070	0.85[ASN][1000 genomes]
rs6901488	0.85[ASN][1000 genomes]
rs6931196	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347742	0.85[ASN][1000 genomes]
rs9355427	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163745600-163773600	Enhancers	Brain Substantia Nigra	brain
2	chr6:163764400-163769400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:163765000-163774000	Weak transcription	Spleen	Spleen
4	chr6:163765600-163773000	Enhancers	Brain Angular Gyrus	brain
5	chr6:163766000-163771400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:163767200-163770200	Enhancers	Fetal Heart	heart
7	chr6:163767400-163769000	Enhancers	Hela-S3	cervix
8	chr6:163767600-163770200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:163767600-163776200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:163767600-163776600	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:163767800-163768800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:163767800-163768800	Enhancers	Fetal Muscle Leg	muscle
13	chr6:163767800-163768800	Enhancers	NHDF-Ad	bronchial
14	chr6:163767800-163768800	Enhancers	NHEK	skin
15	chr6:163768000-163768800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:163768000-163769800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:163768000-163770400	Enhancers	HSMMtube	muscle
18	chr6:163768000-163770600	Enhancers	Brain Anterior Caudate	brain
19	chr6:163768200-163768800	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:163768200-163769200	Enhancers	HSMM	muscle
21	chr6:163768200-163769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:163768200-163769600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:163768200-163770000	Enhancers	Brain Hippocampus Middle	brain
24	chr6:163768200-163770200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr6:163768200-163771800	Weak transcription	Fetal Brain Male	brain
26	chr6:163768200-163775600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:163768200-163776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:163768200-163776400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:163768400-163768800	Weak transcription	Psoas Muscle	Psoas
30	chr6:163768400-163769600	Weak transcription	Left Ventricle	heart
31	chr6:163768400-163770400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:163768400-163771600	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:163768400-163772000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:163768400-163773400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:163768400-163775800	Weak transcription	Right Atrium	heart
36	chr6:163768600-163769000	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr6:163768600-163770200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:163768600-163770200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:163768600-163770400	Weak transcription	NH-A	brain
40	chr6:163768600-163772200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:163768600-163773800	Weak transcription	HUVEC	blood vessel
42	chr6:163768600-163775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:163768600-163775200	Weak transcription	Right Ventricle	heart
44	chr6:163768600-163775800	Weak transcription	Esophagus	oesophagus

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