Variant report

Variant	rs9365586
Chromosome Location	chr6:164029335-164029336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10945902	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10945904	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10945908	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11752104	0.92[EUR][1000 genomes]
rs12189941	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12190194	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12190195	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12199831	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12203750	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12212261	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12212838	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12525739	0.92[EUR][1000 genomes]
rs13195095	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17446816	0.81[AMR][1000 genomes]
rs4289623	1.00[JPT][hapmap]
rs66492083	0.81[AMR][1000 genomes]
rs6912440	0.97[EUR][1000 genomes]
rs6912608	0.97[EUR][1000 genomes]
rs6920319	0.94[EUR][1000 genomes]
rs6920464	0.94[EUR][1000 genomes]
rs6935776	0.97[EUR][1000 genomes]
rs7743998	1.00[JPT][hapmap]
rs7744332	1.00[JPT][hapmap]
rs9347769	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9355431	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9364695	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9365584	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9365585	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164027400-164030000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164029200-164029600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:164029200-164029600	Weak transcription	Brain Germinal Matrix	brain

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