Variant report

Variant	rs6935776
Chromosome Location	chr6:164030045-164030046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163999887..164002454-chr6:164029460..164032387,2	K562	blood:
2	chr6:164029433..164031807-chr6:164055336..164057552,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10945902	0.91[EUR][1000 genomes]
rs10945904	0.92[EUR][1000 genomes]
rs10945908	0.92[EUR][1000 genomes]
rs11752104	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12189941	0.94[EUR][1000 genomes]
rs12190194	0.94[EUR][1000 genomes]
rs12190195	0.94[EUR][1000 genomes]
rs12199831	0.92[EUR][1000 genomes]
rs12203750	0.94[EUR][1000 genomes]
rs12208188	0.80[ASN][1000 genomes]
rs12212261	0.94[EUR][1000 genomes]
rs12212838	0.93[EUR][1000 genomes]
rs12525739	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13195095	0.94[EUR][1000 genomes]
rs4289623	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6912440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912608	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920319	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920464	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7743998	1.00[JPT][hapmap]
rs7744332	1.00[JPT][hapmap]
rs9347769	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9355431	0.93[EUR][1000 genomes]
rs9364695	0.93[EUR][1000 genomes]
rs9365582	0.88[CHD][hapmap]
rs9365584	0.93[EUR][1000 genomes]
rs9365585	0.94[EUR][1000 genomes]
rs9365586	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164029600-164030400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:164030000-164030200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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