Variant report

Variant	rs9365582
Chromosome Location	chr6:164020668-164020669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164015543..164017705-chr6:164019767..164021884,2	K562	blood:
2	chr6:164007449..164010617-chr6:164019877..164022643,3	K562	blood:
3	chr6:164015543..164019419-chr6:164019767..164023653,5	K562	blood:
4	chr6:163832665..163835170-chr6:164019087..164021552,2	K562	blood:

Variant related genes	Relation type
ENSG00000228692	Chromatin interaction
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10945904	0.88[ASN][1000 genomes]
rs10945908	0.88[ASN][1000 genomes]
rs12189941	0.88[ASN][1000 genomes]
rs12190194	0.88[ASN][1000 genomes]
rs12190195	0.88[ASN][1000 genomes]
rs12199831	0.88[ASN][1000 genomes]
rs12203750	0.88[ASN][1000 genomes]
rs12208188	0.83[ASN][1000 genomes]
rs12212261	0.88[ASN][1000 genomes]
rs12212838	0.88[ASN][1000 genomes]
rs12216192	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13195095	0.88[ASN][1000 genomes]
rs2038148	1.00[CHB][hapmap]
rs4289623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9295225	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9346963	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9355431	0.88[ASN][1000 genomes]
rs9364695	0.88[ASN][1000 genomes]
rs9365584	0.88[ASN][1000 genomes]
rs9365585	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164019800-164021600	Enhancers	Liver	Liver
2	chr6:164020000-164022200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:164020200-164022000	Enhancers	HSMMtube	muscle
4	chr6:164020400-164021800	Enhancers	Fetal Muscle Leg	muscle
5	chr6:164020600-164022200	Enhancers	Fetal Heart	heart

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