Variant report
| Variant | rs9346963 |
|---|---|
| Chromosome Location | chr6:164012860-164012861 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:164012843..164014489-chr6:164039863..164041950,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10945902 | 0.88[ASN][1000 genomes] |
| rs10945904 | 1.00[ASN][1000 genomes] |
| rs10945908 | 1.00[ASN][1000 genomes] |
| rs12189941 | 1.00[ASN][1000 genomes] |
| rs12190194 | 1.00[ASN][1000 genomes] |
| rs12190195 | 1.00[ASN][1000 genomes] |
| rs12199831 | 1.00[ASN][1000 genomes] |
| rs12203750 | 1.00[ASN][1000 genomes] |
| rs12208188 | 0.95[ASN][1000 genomes] |
| rs12212261 | 1.00[ASN][1000 genomes] |
| rs12212838 | 1.00[ASN][1000 genomes] |
| rs12216192 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13195095 | 1.00[ASN][1000 genomes] |
| rs4289623 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9295225 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9347769 | 0.81[ASN][1000 genomes] |
| rs9355431 | 1.00[ASN][1000 genomes] |
| rs9364695 | 1.00[ASN][1000 genomes] |
| rs9365582 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9365584 | 1.00[ASN][1000 genomes] |
| rs9365585 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018860 | chr6:163939347-164532579 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv538526 | chr6:163939347-164532579 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv2758092 | chr6:163992064-164161903 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 4 | esv2759490 | chr6:163992064-164161903 | Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:164010200-164013600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
