Variant report

Variant	rs6920464
Chromosome Location	chr6:164031494-164031495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163999887..164002454-chr6:164029460..164032387,2	K562	blood:
2	chr6:164029433..164031807-chr6:164055336..164057552,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10945902	0.93[EUR][1000 genomes]
rs10945904	0.94[EUR][1000 genomes]
rs10945908	0.94[EUR][1000 genomes]
rs11752104	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12189941	0.96[EUR][1000 genomes]
rs12190194	0.96[EUR][1000 genomes]
rs12190195	0.96[EUR][1000 genomes]
rs12199831	0.94[EUR][1000 genomes]
rs12203750	0.96[EUR][1000 genomes]
rs12212261	0.96[EUR][1000 genomes]
rs12212838	0.95[EUR][1000 genomes]
rs12525739	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13195095	0.96[EUR][1000 genomes]
rs6912440	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6912608	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6920319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935776	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9347769	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9355431	0.95[EUR][1000 genomes]
rs9364695	0.95[EUR][1000 genomes]
rs9365584	0.95[EUR][1000 genomes]
rs9365585	0.96[EUR][1000 genomes]
rs9365586	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164031400-164032600	Enhancers	Fetal Heart	heart

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